Past exam of the soft matter and biological physics course of the University of Cambridge / 2015 / Paper 1 / 2 / a / Solution

The generic instrument uses a magnetically responsive bead, a controllable external field and optical tracking of bead position or orientation. A field gradient supplies translational force; rotating an appropriate anisotropic field or bead moment can supply torque. For a permanent dipole,For an isotropic unsaturated induced moment with effective susceptibility contrast $\Delta \chi$ and bead volume $V$, the induced magnetic bead force instead follows fromThe factor one-half accounts for inducing the moment. A spatially uniform field alone supplies no translational force; an isotropic induced moment parallel to the field supplies no orienting torque either. Saturation or magnetic anisotropy requires the corresponding magnetization model.

Position tracking needs a length calibration, and force calibration needs measured field gradients, a known reference load, or calibrated thermal fluctuations. For a generic tensioned tether of extension $\ell$, small transverse displacement $x$ costs energy $F{x}^2/(2\ell )$, so $F=k_{B}T\ell /⟨x^2⟩$ under equilibrium, small-angle and single-mode assumptions. Attachment geometry, bead rotation, wall drag and finite acquisition bandwidth can affect this calibration. These equations describe generic magnetic tweezers mechanics, without assigning a biological response.

TODO: biological single-molecule applications are user-deferred; no biological systems or protocols have been researched or solved.