Pseudomonas syringae pv. tomato DC3000 is the name used for a well-studied bacterial strain in experimental interactions with tomato and Arabidopsis thaliana. The abbreviation
pv. denotes pathovar, a classification related to pathogenic characteristics, while DC3000 identifies the particular strain. Those parts of the label carry more information than the species name Pseudomonas syringae alone.[ref]The 2003 genome report described about 6.5 megabases of DNA, comprising one circular chromosome and two plasmids, with 5763 predicted open reading frames. The assembly and annotation created a reference for comparing molecular observations, rather than merely attaching a name to a culture.[ref]
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000 by C. Robin Buell and others. Abstract and Figure1, genome components and publication-specific annotation
A predicted open reading frame is not automatically an experimentally established protein function.In a 2011 plant-community experiment, this strain supplied a common challenge against which different bacterial colonists were compared. Both pathogen population and host disease symptoms were measured.[ref]
Protection of Arabidopsis thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in a controlled model system by Gerd Innerebner and others. Abstract and Figures1–2
Holding the challenge strain fixed makes differences between colonist treatments easier to interpret. It does not make the experiment representative of every Pseudomonas syringae strain or every host. Articles by others on the same topic
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