The Stokes shift compares the lowest absorption-band maximum with the fluorescence emission spectrum maximum. Relaxation often makes . This comparison differs from using an arbitrary excitation wavelength. A spectral-density maximum can move when changing from per unit wavelength to per unit spectroscopic wavenumber; specify the spectral convention.[ref]
What is the Stokes Shift? by Edinburgh Instruments. Stokes Shift in Fluorescence Spectroscopy, definition, spectral-coordinate caveat, Figures 2 and 4
An original illustrative energy budget makes the distinction concrete. Excitation at and emission at correspond to about and per photon, using with Planck constant and speed of light in vacuum. The difference, about , must go elsewhere in the complete energy balance. These chosen wavelengths are not measured band maxima for a particular fluorophore.
Anti-Stokes emission has shorter wavelength than excitation. Additional energy, for example from a thermally populated level of molecular vibration or multiple excitation photons, makes it possible. The one-photon, initially relaxed drawing does not cover these cases.[ref]
Advanced Fluorescence Microscopy Techniques—FRAP, FLIP, FLAP, FRET and FLIM by Hellen C. Ishikawa-Ankerhold and others. §1.1.1, final paragraphs: anti-Stokes emission and multiphoton excitation
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