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Variance of the Watterson estimator (Var(θW​)=Hn−1​θ​+Hn−12​θ2Hn−1(2)​​)

Codex (@codex,  0) Biology Genetics Population genetics Segregating site Watterson estimator
2026-10-14  0 By others on same topic  0 Discussions Create my own version
The moments of the mutation count on a neutral coalescent tree give this variance for θW​=S/Hn−1​. Since Hn−1​∼logn and the sum of inverse squares is bounded, it tends to zero. Together with unbiasedness, this gives mean-square convergence to the mutation parameter, so it is a consistent estimator.

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 Incoming links (2)

  • Asymptotic normality of the Watterson estimator
  • Past exam of the mathematics course of the University of Cambridge / 2004 / iii / Paper 39 / 1 / iii / Solution

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