University of Cambridge alumnus by Ciro Santilli 37 Updated +Created
Intel CPU by Ciro Santilli 37 Updated +Created
C-peptide by Ciro Santilli 37 Updated +Created
B chain of insulin by Ciro Santilli 37 Updated +Created
A chain of insulin by Ciro Santilli 37 Updated +Created
Proinsulin by Ciro Santilli 37 Updated +Created
c/inc_loop_asm_n.sh by Ciro Santilli 37 Updated +Created
This is a quick Microarchitectural benchmark to try and determine how many functional units our CPU has that can do an inc instruction at the same time due to superscalar architecture.
The generated programs do loops like:
loop:
  inc %[i0];
  inc %[i1];
  inc %[i2];
  ...
  inc %[i_n];
  cmp %[max], %[i0];
  jb loop;
with different numbers of inc instructions.
Figure 1.
c/inc_loop_asm_n.sh results for a few CPUs
.
Quite clearly:
and both have low instruction count effects that destroy performance, AMD at 3 and Intel at 3 and 5. TODO it would be cool to understand those better.
Data from multiple CPUs manually collated and plotted manually with ../c/inc_loop_asm_n_manual.sh.
c/inc_loop_asm.c by Ciro Santilli 37 Updated +Created
This is the only way that we've managed to reliably get a single inc instruction loop, by using inline assembly, e.g. on we do x86:
loop:
  inc %[i];
  cmp %[max], %[i];
  jb loop;
For 1s on P14s Ubuntu 25.04 GCC 14.2 -O0 x86_64 we need about 5 billion:
time ./inc_loop_asm.out 5000000000
c/inc_loop.c by Ciro Santilli 37 Updated +Created
Ubuntu 25.04 GCC 14.2 -O0 x86_64 produces a horrendous:
11c8:       48 83 45 f0 01          addq   $0x1,-0x10(%rbp)
11cd:       48 8b 45 f0             mov    -0x10(%rbp),%rax
11d1:       48 3b 45 e8             cmp    -0x18(%rbp),%rax
11d5:       72 f1                   jb     11c8 <main+0x7f>
To do about 1s on P14s we need 2.5 billion instructions:
time ./inc_loop.out 2500000000
and:
time ./inc_loop.out 2500000000
gives:
          1,052.22 msec task-clock                       #    0.998 CPUs utilized             
                23      context-switches                 #   21.858 /sec                      
                12      cpu-migrations                   #   11.404 /sec                      
                60      page-faults                      #   57.022 /sec                      
    10,015,198,766      instructions                     #    2.08  insn per cycle            
                                                  #    0.00  stalled cycles per insn   
     4,803,504,602      cycles                           #    4.565 GHz                       
        20,705,659      stalled-cycles-frontend          #    0.43% frontend cycles idle      
     2,503,079,267      branches                         #    2.379 G/sec                     
           396,228      branch-misses                    #    0.02% of all branches
With -O3 it manages to fully unroll the loop removing it entirely and producing:
    1078:       e8 d3 ff ff ff          call   1050 <strtoll@plt>
}
    107d:       5a                      pop    %rdx
    107e:       c3                      ret
to is it smart enough to just return the return value from strtoll directly as is in rax.
Inline assembly by Ciro Santilli 37 Updated +Created
Insulin by Ciro Santilli 37 Updated +Created
Studying insulin reveals some really cool protein motifs of life:
Figure 1.
Primary structure of insulin
. Source.
The Amino-acid Sequence in the Phenylalanyl Chain of Insulin by Ciro Santilli 37 Updated +Created
This is where he started publishing the sequence of insulin. The paper gives the full B-chain sequence, which it tentatively calls the "Phenylalanyl Chain" because it starts with a Phenylalanyl.
The official link seems to be: portlandpress.com/biochemj/article/49/4/463/47212/The-amino-acid-sequence-in-the-phenylalanyl-chain It seems to explain the methods very well at first glance, with lots of schematics.
Sanger method by Ciro Santilli 37 Updated +Created
C example by Ciro Santilli 37 Updated +Created
Phi X 174 by Ciro Santilli 37 Updated +Created
Peptide hormone by Ciro Santilli 37 Updated +Created
Programming language feature by Ciro Santilli 37 Updated +Created
Pulsar by Ciro Santilli 37 Updated +Created
This is one of those things that when astronomers first saw them they went "oh fuck we've found extraterrestrial life".
CPU microbenchmark by Ciro Santilli 37 Updated +Created
Some examples:

Pinned article: ourbigbook/introduction-to-the-ourbigbook-project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 5. . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact