Mars sample-return mission by Ciro Santilli 35 Updated +Created
Not done yet as of 2020! Will be done one day for sure.
Fabry-Pérot interferometer by Ciro Santilli 35 Updated +Created
Video 1.
Fabry Perot Interferometer by JFC UCL (2016)
Source. Description only, reasonable animations. Considers the case of two nearby beam splitters.
Video 2.
Fabry-Perot Introduction by Williams College Physics (2020)
Source.
Shows a working device. Confocal optical cavity, one of the mirrors scans back and forward moved by a piezoelectric motor, this is called a "scanning Fabry-Perot interferometer".
Does not produce an interference pattern, only an on/off blob, which is then fed into an oscilloscope for analysis. The oscilloscope shows both the mirror displacement (which is given by a voltage) and the light detector output.
Video 3.
Aligning a Scanning Fabry-Perot Interferometer by University of South Florida (2016)
Source. Very detailed, and shows of some nice equipment and techniques.
feathersjs/feathers-chat by Ciro Santilli 35 Updated +Created
The main FeathersJS hello world demo. Notable missing things...
E. Coli K-12 MG1655 gene thrA by Ciro Santilli 35 Updated +Created
The second gene in the E. Coli K-12 MG1655 genome. Part of the E. Coli K-12 MG1655 operon thrLABC.
Part of a reaction that produces threonine.
This protein is an enzyme. The UniProt entry clearly shows the chemical reactions that it catalyses. In this case, there are actually two! It can either transforming the metabolite:
  • "L-homoserine" into "L-aspartate 4-semialdehyde"
  • "L-aspartate" into "4-phospho-L-aspartate"
Also interestingly, we see that both of those reaction require some extra energy to catalyse, one needing adenosine triphosphate and the other nADP+.
TODO: any mention of how much faster it makes the reaction, numerically?
Since this is an enzyme, it would also be interesting to have a quick search for it in the KEGG entry starting from the organism: www.genome.jp/pathway/eco01100+M00022 We type in the search bar "thrA", it gives a long list, but the last entry is our "thrA". Selecting it highlights two pathways in the large graph, so we understand that it catalyzes two different reactions, as suggested by the protein name itself (fused blah blah). We can now hover over:
  • the edge: it shows all the enzymes that catalyze the given reaction. Both edges actually have multiple enzymes, e.g. the L-Homoserine path is also catalyzed by another enzyme called metL.
  • the node: they are the metabolites, e.g. one of the paths contains "L-homoserine" on one node and "L-aspartate 4-semialdehyde"
Note that common cofactor are omitted, since we've learnt from the UniProt entry that this reaction uses ATP.
If we can now click on the L-Homoserine edge, it takes us to: www.genome.jp/entry/eco:b0002+eco:b3940. Under "Pathway" we see an interesting looking pathway "Glycine, serine and threonine metabolism": www.genome.jp/pathway/eco00260+b0002 which contains a small manually selected and extremely clearly named subset of the larger graph!
But looking at the bottom of this subgraph (the UI is not great, can't Ctrl+F and enzyme names not shown, but the selected enzyme is slightly highlighted in red because it is in the URL www.genome.jp/pathway/eco00260+b0002 vs www.genome.jp/pathway/eco00260) we clearly see that thrA, thrB and thrC for a sequence that directly transforms "L-aspartate 4-semialdehyde" into "Homoserine" to "O-Phospho-L-homoserine" and finally tothreonine. This makes it crystal clear that they are not just located adjacently in the genome by chance: they are actually functionally related, and likely controlled by the same transcription factor: when you want one of them, you basically always want the three, because you must be are lacking threonine. TODO find transcription factor!
The UniProt entry also shows an interactive browser of the tertiary structure of the protein. We note that there are currently two sources available: X-ray crystallography and AlphaFold. To be honest, the AlphaFold one looks quite off!!!
By inspecting the FASTA for the entire genome, or by using the NCBI open reading frame tool, we see that this gene lies entirely in its own open reading frame, so it is quite boring
From the FASTA we see that the very first three Codons at position 337 are
ATG CGA GTG
where ATG is the start codon, and CGA GTG should be the first two that actually go into the protein:
ecocyc.org/gene?orgid=ECOLI&id=ASPKINIHOMOSERDEHYDROGI-MONOMER mentions that the enzime is most active as protein complex with four copies of the same protein:
Aspartate kinase I / homoserine dehydrogenase I comprises a dimer of ThrA dimers. Although the dimeric form is catalytically active, the binding equilibrium dramatically favors the tetrameric form. The aspartate kinase and homoserine dehydrogenase activities of each ThrA monomer are catalyzed by independent domains connected by a linker region.
TODO image?
Arago spot by Ciro Santilli 35 Updated +Created
Continental drift by Ciro Santilli 35 Updated +Created
Ubuntu 21.10 by Ciro Santilli 35 Updated +Created
GDM crashes sometimes when switching windows right after opening a new window: bugs.launchpad.net/ubuntu/+source/gdm/+bug/1956299
Node.js SQLite bindings by Ciro Santilli 35 Updated +Created
SQL isolation level example by Ciro Santilli 35 Updated +Created
SARS-CoV-2 S protein by Ciro Santilli 35 Updated +Created
Spike.
Nucleocapsid phosphoprotein, sticks to the RNA inside.
www.nature.com/articles/s41467-020-20768-y mentions functions:
  • helps pack the viral RNA into the capsule
  • also has a side function in immune suppression
Nick Leeson by Ciro Santilli 35 Updated +Created
Lecture 1 by Ciro Santilli 35 Updated +Created
Bibliography review:
Course outline given:
Non-relativistic QFT is a limit of relativistic QFT, and can be used to describe for example condensed matter physics systems at very low temperature. But it is still very hard to make accurate measurements even in those experiments.
Defines "relativistic" as: "the Lagrangian is symmetric under the Poincaré group".
Mentions that "QFT is hard" because (a finite list follows???):
There are no nontrivial finite-dimensional unitary representations of the Poincaré group.
But I guess that if you fully understand what that means precisely, QTF won't be too hard for you!
Notably, this is stark contrast with rotation symmetry groups (SO(3)) which appears in space rotations present in non-relativistic quantum mechanics.
Lecture 5 by Ciro Santilli 35 Updated +Created
  • something about finding a unitary representation of the poincare group
Quantinuum hardware by Ciro Santilli 35 Updated +Created
Con of superconducting qubits by Ciro Santilli 35 Updated +Created

There are unlisted articles, also show them or only show them.