In the imposed free-draining polymer friction model, the drag coefficients of the monomers add, giving and . Taking the same three-dimensional centre-of-mass RMS convention as part (ii),
The polymer is a one-dimensional connected contour, but that alone does not restrict its centre of mass to one spatial axis. If the intended coordinate is instead literal one-dimensional curvilinear motion along an entanglement tube, its RMS contour displacement is . That is a different coordinate and should not be compared with a three-dimensional displacement without stating the conversion/model.
Additive local drag is the free-draining Rouse model approximation. It neglects long-range solvent-mediated hydrodynamic interactions and is not a complete theory of an entangled chain. In a tube/reptation description, curvilinear diffusion can scale as while long-time spatial centre-of-mass diffusion scales as after the chain renews its tube. Conversely a dilute unentangled coil can exhibit Zimm model hydrodynamic coupling. Monomer motion, centre-of-mass motion and contour sliding therefore cannot all be identified with the same displacement law.
In gel sieving of synthetic polymers, gel electrophoresis combines drift under an electric field with size- and conformation-dependent obstruction by a porous matrix. In weak-field free solution, force balance gives and, in a simple effective-charge/effective-friction model, . The mobility is motion relative to the medium, so fluid motion from electro-osmosis must be accounted for separately. This is the operational mobility convention, not a claim that the bare structural charge is always the effective driving charge.[ref]
For a chain with free-draining polymer friction with approximately constant effective electric charge per segment, both charge and friction scale with . The free-solution mobility can therefore become nearly independent of length, making size separation poor. A gel adds steric constraints. Coils smaller than the mesh can pass relatively easily; larger coils require deformation and pore-to-pore rearrangement. A schematic weak-sieving law is , where matrix concentration and retardation coefficient are defined by a calibration; it is not a universal size law.
When a long flexible charged polymer is confined to a tube of available paths, reptation supplies another regime. An additive-friction model gives contour diffusion and renewal time . For ideal large-scale chain statistics, , so centre-of-mass diffusion scales as . With total effective driving charge proportional to , weak-field mobility can then scale as . This assumes screened/ideal large-scale conformations and linear response; strong-field alignment, trapping and nonideal matrices can alter the scaling.
Operationally, load narrow zones of independently characterized synthetic standards and sample into a controlled gel, apply a known field and detect migration positions after a measured time. Compare with a free-solution measurement, vary matrix concentration and field, and control temperature, ionic strength, pH and matrix charge. Larger gel pores or lower matrix concentration usually reduce sieving within a given calibrated material system. Excessive field causes Joule heating and can change conformation and mobility. adsorption or electro-osmotic drift can mimic a size effect; standards should match charge chemistry and topology as well as nominal mass.
Band centres move as while ordinary diffusion gives . Resolution depends on separation of centres relative to band widths, not travel distance alone. A neutral tracer helps identify bulk flow, and multiple concentrations test adsorption or overloading. A mobility or band position does not uniquely determine size without a regime-specific calibration. TODO: biomolecular examples, sample preparation and biological applications are user deferred; the account here concerns synthetic charged polymers only.