5-Aminohexanoic acid 2026-10-20
The compound . Regioselected ring expansion of 2-methylcyclopentanone followed by lactam hydrolysis is a constitutional synthetic disconnection.
The first step is a vinylogous aldol condensation at C5 of the unsaturated lactam. Number nitrogen N1, the lactam carbonyl C2, and then the methoxy-substituted alkene C3=C4 and the methylene group C5.
hydroxide reversibly removes a C5 proton. The resulting vinylogous enolate is delocalized through C5–C4–C3–C2–O: it is not necessary to create an unstabilized isolated carbanion beside nitrogen. Its C5 nucleophilic contributor attacks acetone. protonation gives a C5-linked tertiary alcohol, . Further removal of the remaining C5 hydrogen and elimination through an aldol-dehydration sequence forms C5=C(Me)2, leaving the original methoxy enol ether in place.
In the second step, aqueous acid hydrolyses that enol ether to a ketone at C4. protonation at C3 gives an oxygen-stabilized cation at C4. water attacks C4, proton transfers form a hemiacetal-like intermediate, and loss of methanol followed by deprotonation produces C4=O and the C3 methylene group.
The lactam carbonyl and N–H group remain, as does the exocyclic isopropylidene group. This accounts for replacement of the C3=C4–OMe unit by C3H2–C4=O without inserting a new oxygen into the ring skeleton.
Both permitted alternatives follow the same condensation–activation–migration sequence. sodium acetate liberates a useful concentration of hydroxylamine from its hydrochloride while providing a buffered medium. nitrogen of NH2OH attacks the ketone carbonyl; proton transfer gives a carbinolamine. protonation of its carbon-derived OH and loss of water, with nitrogen lone-pair donation, then gives the oxime after deprotonation. The two C=N geometries can be separated.
For the B-to-D route, oxime O-tosylation begins when oxime oxygen attacks sulfur of tosyl chloride and chloride leaves; triethylamine accepts the released proton. The resulting O-tosyl oxime has an excellent leaving group. The bond, anti to N–OTs, migrates to nitrogen while N–O cleaves, giving a ring-expanded nitrilium ion. Its local connectivity is , with the existing scaffold still joining the two paths. water attacks the nitrilium carbon . proton transfers and imidic-acid/amide tautomerization produce D, with nitrogen inserted on the aromatic side of the old carbonyl.
For the C-to-E route, the same O-tosylation activates the other oxime geometry. Now the anti bond is ; its migration gives , and aqueous trapping produces E, with nitrogen inserted on the spiro-junction side. Each Beckmann rearrangement expands the ketone's six-membered ring to a seven-membered lactam. The original carbonyl carbon remains the amide carbonyl carbon; nitrogen is the inserted atom. In this mechanism the ketone oxygen is lost during oxime condensation, the oxime oxygen leaves with the sulfonate group, and water supplies the new amide oxygen.
The reactive fragment is the C6 amidine-like portion of the purine ring; the N9–ribose attachment is retained. Write it locally as , with the rest of the fused ring understood. One productive acid catalysis route protonates N1, making C6 more electrophilic. water then adds at C6 while the C6=N1 pi electrons move onto N1. Subsequent proton transfers generate a carbinolamine and then a protonated amino leaving group:
These are local bonding fragments: C6 retains its bond to the adjoining ring carbon at every step. In the addition step, an oxygen lone pair forms C6–O and the C6=N1 pi bond opens. During collapse, an oxygen lone pair reforms C6=O and the C6–N6 bond breaks toward the departing nitrogen. Solvent mediates each proton transfer; no direct unsupported transfer across a long distance is required.
water supplies the new C6 oxygen, and ammonia is expelled after protonation of the leaving group. Final deprotonation gives the lactam form of inosine. In acidic bulk solution the released ammonia is largely trapped as ammonium. The catalytic proton transfers regenerate acid around the substitution cycle; ammonium trapping separately affects the net proton balance. This is hydrolytic deamination, not cleavage of the glycosidic bond.
Sodium borohydride is chemoselective for the ketone; lithium aluminium hydride reduces both the ketone and the lactam. In an amide, donation of the N lone pair into the carbonyl system reduces the carbonyl carbon's electrophilicity. It is therefore substantially less susceptible to the milder hydride donor.
Lithium aluminium hydride supplies more strongly reducing hydride equivalents, and the strong affinity of aluminium for oxygen assists removal of the amide oxygen through the iminium pathway. This difference explains both the unchanged lactam carbonyl in B and the absence of that oxygen in C. Both reactions are interpreted after the usual protonating workup.
B is 4-hydroxy-1-methylpyrrolidin-2-one; C is 1-methylpyrrolidin-3-ol. Their ring connectivities are shown below. Each ring remains five membered; the attached N-methyl group is retained.
Figure 1.
Original cyclic product structures and hydride electron-pair arrows for ketone and lactam reduction
. Details.
For B, a B–H bond of sodium borohydride supplies a hydride equivalent to the ketone carbonyl carbon, and the carbonyl pair moves to oxygen. This gives an alkoxide, whose protonation during the reaction or workup gives the secondary alcohol. The lactam carbonyl remains. Converting one to adds two H atoms and gives .
For C, lithium aluminium hydride reduces that ketone in the same net way and also reduces the lactam. Coordination of the amide oxygen to aluminium assists hydride attack at its carbonyl carbon, giving a tetrahedral intermediate. The N lone pair then forms a C=N bond while the C–O bond breaks to an aluminium-bound oxygen group. A resulting iminium ion accepts a second hydride at carbon, yielding the cyclic tertiary amine. Aqueous workup protonates the ketone-derived alkoxide.
The lactam conversion replaces by ; its oxygen is removed rather than retained as another alcohol. Together with ketone reduction, the net change is , giving . No stereochemistry is specified: the new alcohol stereocentre is formed as a racemic mixture in an achiral environment.
Disconnect the N–cyclohexyl bond as a late reductive amination of a primary amine with cyclohexanone. Disconnect the exocyclic methylene as a Wittig methylenation of a substituted cyclohexanone. The useful ring precursor is 3-methyl-5-substituted cyclohex-2-en-1-one, accessible by a Robinson annulation. The pendant substituent throughout ring construction should be .
Start with nucleophilic substitution of the supplied bromo ester by cyanide:
Reduce the nitrile selectively to the primary amine while retaining the ester, for example by controlled catalytic hydrogenation with Raney nickel in the presence of ammonia, and trap the amine promptly as its Boc carbamate. Avoid heating or concentrating the free amino ester, which can cyclize to a lactam. lithium aluminium hydride would be unsuitable at this stage because it also reduces the ester.
Partial reduction of the protected ester with DIBAL at low temperature gives . The carbon of the original nitrile is now the methylene nearest nitrogen; the original ester carbonyl is the aldehyde carbon. Condense this aldehyde with acetone and dehydrate to .
Now add the enolate of a second acetone molecule in a Michael addition. With , the resulting chain is
Intramolecular aldol condensation gives 3-Me-5-R-cyclohex-2-en-1-one. The beta methyl derives from the carbonyl end attacked in the ring closure; the pendant aminoalkyl chain remains at C5. Hydrogenate the ring C=C selectively, retaining the ketone, then methylenate the ketone with preformed . Do the hydrogenation before installing the exocyclic methylene so that it is not hydrogenated away.
Remove Boc under brief mild conditions, checking for acid-induced exocyclic alkene isomerization. reductive amination of the resulting primary amine with cyclohexanone, followed by selective imine reduction, installs the secondary N-cyclohexyl group. Use controlled stoichiometry to suppress tertiary amine formation. The methyl and four-carbon aminoalkyl substituents occupy the required 1,3-related ring positions, with the exocyclic methylene at the former carbonyl. No ring stereochemistry is specified. The target contains eighteen carbons: six ring carbons, one ring methyl, one methylene, four in the linker, and six in the N-cyclohexyl group.
The target is 5-Aminohexanoic acid, . Disconnect its terminal amine/carboxylic-acid relationship through hydrolysis of 6-methylpiperidin-2-one. This six-membered lactam follows from a regioselected Beckmann ring expansion of 2-methylcyclopentanone oxime.
Start with cyclopentanone. Form its enolate with lithium diisopropylamide in dry THF at low temperature, add methyl iodide, then quench to obtain 2-methylcyclopentanone. Control the methyl iodide/base stoichiometry to suppress a second alkylation. React the ketone with hydroxylamine to form its oxime and select the geometrical oxime isomer in which the bond to the methyl-substituted adjacent ring carbon is anti to the departing oxime oxygen group.
Activate the oxime, for example under appropriate acid-promoted Beckmann conditions. The anti methyl-bearing C–C bond migrates onto nitrogen as the N–O-derived leaving group departs, inserting nitrogen between the original carbonyl carbon and the methyl-substituted ring carbon. Hydration/tautomerization gives 6-methylpiperidin-2-one. The opposite oxime geometry would insert nitrogen on the other side and ultimately place methyl at a different position in the amino acid; oxime geometry is therefore an essential part of this proposal.
Hydrolyse the lactam with aqueous acid and heat, then adjust the work-up to the desired acid/ammonium form. Cleavage of its acyl–nitrogen bond opens the ring to after suitable neutralization. All five original cyclopentanone carbons are retained, and the one methyl carbon comes from methyl iodide. A racemic mixture product is appropriate to the stereochemically unspecified target. The reaction sequence is an organic ring-expansion synthesis and requires no biological transformation.
Figure 1.
Original carbon-numbered route through the anti oxime and ring-expanded lactam to the amino acid
. Details.
Activate the oxime hydroxyl oxygen with thionyl chloride to give a good N–O leaving group. In the Beckmann rearrangement branch, the C–C bond anti to that leaving group migrates onto nitrogen as the N–O bond breaks. Here the migrating carbon is the spiro centre. Inserting N between that centre and the former oxime carbon expands the five-membered oxime ring to a six-membered nitrilium ion ring. Water attacks the electrophilic nitrilium carbon, followed by proton transfers and tautomerization to the observed spiro lactam. The lactam carbonyl oxygen is introduced in the aqueous work-up.
The competing Beckmann fragmentation cleaves the same anti C–C bond instead of completing migration onto N. Formation of the C≡N bond gives an open-chain nitrile and a tertiary carbocation at the former spiro centre. Loss of a proton from the adjacent chain carbon then gives the exocyclic alkene attached to the retained cyclopentane. The key distinction is N insertion and ring expansion for the lactam, versus C–C cleavage followed by elimination for the unsaturated nitrile. Stabilization of the resulting tertiary carbocation makes fragmentation plausible.