J. Michael Li 2026-11-05
J. Michael Li is a coauthor, with Xueguang Sun and Roger M. Wartell, of the2007 study of frozen-solution conversion between an RNA hairpin and a metastable RNA dimer. The paper identifies the authors with Georgia Tech's School of Biology and gives Li's byline in this form.[ref]
Conversion of stable RNA hairpin to a metastable dimer in frozen solution by Xueguang Sun and others. Title-page byline and affiliation
The study examined a79-nucleotide RNA with two bands in native gel electrophoresis but one in denaturing conditions. Sedimentation equilibrium supported monomer and dimer assignments. Experiments on shorter segments implicated the first21nucleotides in dimer formation.[ref]
Conversion of stable RNA hairpin to a metastable dimer in frozen solution by Xueguang Sun and others. Abstract and Results, monomer/dimer identification and21-nucleotide segment
A useful distinction follows: two native gel bands alone do not count the number of strands in each structure. Changing the folding state can change electrophoretic mobility without changing strand mass. Combining a mobility observation with an independent association measurement addresses that ambiguity, which is central to interpreting this contribution.
RNA dimer 2026-11-05
An RNA dimer is a complex containing two associated RNA molecules. The two strands can have identical or different nucleotide sequences, and they need not form one completely paired duplex. Association joins molecular partners; it is different from joining their backbones into one longer covalent RNA strand.
For an original count, two 27-nucleotide strands contain 54 residues altogether. They remain two RNA molecules in a dimer even if much of their base pairing is intermolecular. One continuous 54-residue strand with an intramolecular stem-loop has the same total residue count but a different connectivity. Strand count and RNA secondary structure are separate specifications.
A primary experiment used a 79-nucleotide RNA that gave two bands in native polyacrylamide gel electrophoresis but one band under denaturing conditions. That observation suggested alternative assemblies, but a second method was needed to test their molecular sizes. Sedimentation equilibrium measurements at 20,000 rpm used DNA standards of known size. Samples containing two native-gel bands had an apparent average molecular mass times the monomer mass, compared with for a preparation giving one native band. The combined evidence supported monomer and dimer assignments.[ref]
The study also located an important 21-residue association segment and showed preparation-history effects. Heating and cooling could change the observed assembly, and some dimer states were kinetically trapped.[ref]
Conversion of stable RNA hairpin to a metastable dimer in frozen solution by Xueguang Sun and others. Abstract and Results,21-nucleotide segment and transition reversibility.
Thus two bands are not automatically two sequence lengths, and one predicted low-energy duplex is not sufficient experimental proof of an RNA dimer.For a reversible self-complementary duplex, self-complementary RNA duplex population provides a quantitative two-species model. More complicated contacts, competing folds or RNA melting hysteresis require corresponding experimental and kinetic tests.
Roger M. Wartell 2026-11-05
Roger M. Wartell is a biophysicist whose research connects nucleic-acid structure with physical measurements of folding and association. His Georgia Tech profile traces his training through physics degrees at Stevens and Rochester and identifies research on DNA melting, RNA-binding proteins and small RNA molecules in ice.[ref]
Roger Wartell profile at Georgia Tech. Biographical summary and research interests; linked CV, education and fields of interest
With Xueguang Sun and J. Michael Li, Wartell investigated a stable RNA hairpin that could form a metastable RNA dimer in frozen solution. Their study combined gel electrophoresis, sedimentation equilibrium and temperature-dependent absorbance to distinguish structures and their interconversion.[ref]
The scientific issue is broader than the existence of two gel bands. A band's electrophoretic mobility depends on molecular shape and experimental conditions as well as size. Independent measurements of association and thermal response help test whether the bands represent two folds of one strand or complexes containing different numbers of strands. Wartell's work illustrates how complementary physical measurements can constrain an otherwise ambiguous structural interpretation.
Xueguang Sun 2026-11-05
Xueguang Sun studied the structure and RNA-binding properties of the bacterial protein Hfq. His Georgia Tech doctoral thesis, dated May2006, identifies Roger M. Wartell as his committee chair and documents structural analysis, binding experiments and studies of RNA association.[ref]
Characterization of E coli Hfq structure and its RNA binding properties by Xueguang Sun. Title and approval pages; chaptersII–IV
The thesis combines predicted protein structure with experiments probing RNA binding, including gel electrophoresis and fluorescence anisotropy. That combination tests a structural hypothesis against binding behavior rather than treating a predicted surface as sufficient evidence of its function.[ref]
Characterization of E coli Hfq structure and its RNA binding properties by Xueguang Sun. ChapterIII, sections on gel mobility shift, fluorescence anisotropy and mutant binding
Sun later coauthored the2007 frozen-solution study with J. Michael Li and Wartell, showing that a stable RNA hairpin could convert efficiently into a metastable RNA dimer under freezing conditions.[ref]
These projects connect molecular recognition with competing structures: a protein can present alternative binding surfaces, and an RNA strand can pair internally or associate with another strand. Experiments are needed to distinguish those possibilities; a sequence or a mobility band alone does not specify the resulting complex.