Nucleosome remodeling factors are a group of protein complexes that play a critical role in the regulation of chromatin structure and function. Chromatin, which is composed of DNA and histone proteins, can exist in a more compact, inactive form or a more relaxed, active form, depending on the cellular context and functional requirements.
A protoplast is a plant or bacterial cell that has had its cell wall removed, allowing the study of the cell membrane and its components in isolation. In plants, protoplasts are crucial for a variety of applications, including genetic engineering, cell fusion experiments, and studies of cellular processes. The removal of the cell wall can be done using enzymes, such as cellulase or pectinase, that break down the cell wall components.
Phage display is a molecular technique that allows for the identification and characterization of proteins, peptides, or antibodies by expressing them on the surface of bacteriophages (viruses that infect bacteria). This technique enables researchers to study interactions between proteins, identify binding partners, and explore various biological processes. Here's how phage display works in more detail: 1. **Construction of a Library**: A diverse library of DNA sequences encoding different peptides or proteins is constructed.
A primer dimer is a common artifact that can occur during the polymerase chain reaction (PCR) process. It results from the non-specific binding of two primers (short sequences of nucleotides) to each other instead of binding to the target DNA. This can lead to the amplification of the primers themselves rather than the intended DNA template. Primer dimers form when two primers have complementary sequences that allow them to anneal to each other, creating a double-stranded structure.
Phosphodiesterase 4 (PDE4) is a specific type of enzyme that belongs to the phosphodiesterase family. Phosphodiesterases are enzymes that break down cyclic nucleotides, which are important signaling molecules in various biological processes. PDE4 specifically hydrolyzes cyclic adenosine monophosphate (cAMP), leading to the termination of cAMP signaling in cells.
RNA-Seq, or RNA sequencing, is a powerful technique used to analyze the transcriptome of an organism. This approach allows researchers to determine the quantity of RNA in a sample at a given time, providing insights into gene expression levels, alternative splicing, and the presence of non-coding RNAs, among other aspects.
Pro-Gastrin-Releasing Peptide (Pro-GRP) is a precursor molecule to gastrin-releasing peptide (GRP), a neuropeptide involved in various physiological processes, including the regulation of gastrointestinal functions and neuroendocrine signaling. GRP is released from nerve endings in the gut and plays a role in stimulating gastric acid secretion, promoting gut motility, and influencing the release of other gastrointestinal hormones.
Pseudoproteases are a type of enzyme that have a structure similar to proteases but lack catalytic activity or the necessary functional properties typically associated with enzymes that cleave peptide bonds. While they may share some structural features with active proteases, such as the presence of certain motifs or domains that are characteristic of this enzyme class, pseudoproteases do not perform the same biological functions.
Pulsed-field gel electrophoresis (PFGE) is a laboratory technique used to separate large DNA molecules by applying an electric field that periodically changes direction. This method is particularly effective for the analysis of large fragments of DNA, generally ranging from about 20 kilobases (kb) to several megabases, which are too large to be effectively separated by standard gel electrophoresis techniques.
The RK2 plasmid is a well-studied example of a conjugative plasmid, which is a small, circular piece of DNA that replicates independently of the chromosomal DNA in a cell. RK2 is particularly notable for its role in the transfer of genetic material between bacteria, a process known as horizontal gene transfer. It was originally derived from the bacterium *Ralstonia solanacearum*.
RNA-targeting small molecule drugs are a class of therapeutics designed to selectively interact with RNA molecules in order to modulate their function and, consequently, influence biological processes associated with diseases. This approach aims to either enhance or inhibit the activity of specific RNA targets, such as mRNA, non-coding RNA (like siRNA and miRNA), or RNA structures, thereby affecting gene expression and cellular processes.
Random Amplification of Polymorphic DNA (RAPD) is a molecular biology technique used to generate DNA fingerprints. It is primarily used for the identification and characterization of genetic variations among individuals in a population. The method is based on the amplification of random segments of DNA using short, arbitrary primers through the polymerase chain reaction (PCR) process.
As of my last knowledge update in October 2021, there isn't a widely recognized public figure or concept known specifically as "Yvonne Stokes." It could refer to a private individual, a local professional, or perhaps a character in a specific context that isn't mainstream.
Small RNA sequencing is a high-throughput sequencing technique used to analyze small RNA molecules within a biological sample. These small RNAs typically range from about 18 to 30 nucleotides in length and include various classes of RNA, such as microRNAs (miRNAs), small interfering RNAs (siRNAs), piwi-interacting RNAs (piRNAs), and other non-coding RNAs.
T7 DNA helicase is an enzyme derived from the T7 bacteriophage, a virus that infects bacteria, particularly Escherichia coli. This enzyme plays a critical role in DNA replication by unwinding double-stranded DNA (dsDNA) into two single strands, which is essential for processes such as DNA replication, transcription, and recombination.
Spin column-based nucleic acid purification is a widely used laboratory technique for isolating DNA or RNA from various biological samples. This method utilizes a solid-phase extraction process, typically involving a silica-based membrane or resin housed within a centrifuge tube (the spin column). Here’s a general overview of how the process works: ### Components: 1. **Spin Column:** A plastic tube containing a silica membrane or other binding materials.
In molecular biology, "sticky" and "blunt" ends refer to the types of ends produced when DNA is cut by restriction enzymes. Understanding these two types of ends is important for DNA cloning, manipulation, and genetic engineering. ### Sticky Ends: - **Definition**: Sticky ends, also known as cohesive ends, are created when a restriction enzyme cuts the DNA at specific sequences, resulting in overhanging single-stranded ends.
TRiC, or the TCP1 Ring Complex, is a molecular chaperone complex found in eukaryotic cells that is vital for the proper folding of a subset of proteins, particularly those that are large, complex, or require assistance during the folding process. TRiC is composed of two rings, each made up of eight identical subunits, providing a barrel-like structure.
As of my last update in October 2023, there isn't a widely known organization, product, or technology specifically named "TopFIND." It's possible that it could refer to a niche service, a new startup, or a specific application that has emerged since my last training data.
Telomeres are the protective caps located at the ends of linear chromosomes. They consist of repetitive sequences of DNA and associated proteins that play a crucial role in maintaining the stability and integrity of the genetic material. Each time a cell divides, a small portion of the telomere sequence is lost due to the limitations of DNA replication. This process helps to prevent the loss of important genetic information from the chromosome itself.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 2.
    You can publish local OurBigBook lightweight markup files to either https://OurBigBook.com or as a static website
    .
    Figure 3.
    Visual Studio Code extension installation
    .
    Figure 4.
    Visual Studio Code extension tree navigation
    .
    Figure 5.
    Web editor
    . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
    Video 4.
    OurBigBook Visual Studio Code extension editing and navigation demo
    . Source.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact