Background noise reduction: couldn't easily find out how, especially with automatic profile detected based on a selected region as mentioned at audacity profile-based background noise removal:
ASDA burnt, put in TopLux on right, old Bell left.
2019-01-24, right one burnt a few days ago, old Bell still works. Inner part black, and black dot on the wire. Putting new TopLux again, but this time on the left, old bell on right.
2019-01-24 toilet top lamp also burnt a few days ago, but not at the same time as mirror. Diall, 240V 40W, GU10. Putting in IKEA 240V 35W.
2019-02-02 toilet mirror lamp left (TopLux) burnt. Don't know what to do anymore. Only the magic Bell lamp works.
2019-03-06 toilet top lamp left burnt, IKEA 240V 35W GU10. Putting in another one.
2019-03-28 toilet top lamp right burnt, IKEA 240V 35W GU10. Waiting for people to come to look at transformer, there is definitely something wrong.
2019-04-03 top lamps: replaced with LED (LAP GU10 3W) since lower power, transformer not changed. Mirror lamps: transformer changed, left one replaced with Homebase Halogen 20W 12V. When I came back lamps flickering badly and sometimes not turning on, recalled technician.
2019-04-12 mirror lamp: it was just he connector that was bad, it was changed, also put LEDs there to make it less warm and hopefully have less tear on connector.
If you live in the relatively food abundant environment of another cell, then you don't have to be able to digest every single food source in existence, of defend against a wide range of predators.
One of the most extreme examples of gene loss is Rickettsia prowazekii, the cause of typhus. [...] Over evolutionary time Rickettsia has lost most of its genes, and now has a mere protein-coding genes left. [...] Rickettsia is a tiny bacterium, almost as small as a virus, which lives as a parasite inside other cells. It is so well adapted to this lifestyle that it can no longer survive outside its host cells. [...] It was able to lose most of its genes in this way simply because they were not needed: life inside other cells, if you can survive there at all, is a spoonfed existence.
and also section "How to lose the cell wall without dying" page 184 has some related mentions:
While many types of bacteria do lose their cell wall during parts of their life cycle only two groups of prokaryotes have succeeded in losing their cell walls permanently, yet lived to tell the tale. It's interesting to consider the extenuating circumstances that permitted them to do so.
[...]
One group, the Mycoplasma, comprises mostly parasites, many of which live inside other cells. Mycoplasma cells are tiny, with very small genomes. M. genitalium, discovered in 1981, has the smallest known genome of any bacterial cell, encoding fewer than 500 genes. M. genitalium, discovered in 1981, has the smallest known genome of any bacterial cell, encoding fewer than 500 genes. [...] Like Rickettsia, Mycoplasma have lost virtually all the genes required for making nucleotides, amino acids, and so forth.
Of course, if academic journals require greater reproducibility for publication, then the cost per paper increases.
However, the total cost has to be smaller than the cost everyone who reads the paper spends to reproduce, no?
The truth is, part of the replication crisis is also due to research groups not wanting to share their precious secrets with others, so they can keep ahead of the publication curve, or maybe spin off a startup.
Frame: size: XS. Marking near bottom bracket: F/N GY17Z1327 DK: WGI GY17Z1327 F ES:BI-2339.
Seatpost: TODO diameter. Measured in store 30.4mm after original stolen, although 2020 says 30.9. 30.4mm seemed to fit OK, and measuring with ruler gives 30.5/30.6, I don't think a 30.9 can possibly fit.
The simplest example of a ring which is not a full fledged field and with commutative multiplication are the integers. Notably, no inverses exist except for the identity itself and -1. E.g. the inverse of 2 would be 1/2 which is not in the set. More specifically, the integers are a commutative ring.
The people from the airlines were somewhat bored with their lives, strangely enough, and at night they would often go to bars to drink. I liked them all, and in order to be sociable, I would go with them to the bar to have a few drinks, several nights a week.
One day, about 3:30 in the afternoon, I was walking along the sidewalk opposite the beach at Copacabana past a bar. I suddenly got this treMENdous, strong feeling: "That's just what I want; that'll fit just right. I'd just love to have a drink right now!"
I started to walk into the bar, and I suddenly thought to myself, "Wait a minute! It's the middle of the afternoon. There's nobody here, There's no social reason to drink. Why do you have such a terribly strong feeling that you have to have a drink?" - and I got scared.
I never drank ever again, since then. I suppose I really wasn't in any danger, because I found it very easy to stop. But that strong feeling that I didn't understand frightened me. You see, I get such fun out of thinking that I don't want to destroy this most pleasant machine that makes life such a big kick. It's the same reason that, later on, I was reluctant to try experiments with LSD in spite of my curiosity about hallucinations.
Some of the output data is stored as .cpickle files. To observe those files, you need the original Python classes, and therefore you have to be inside Docker, from the host it won't work.
We can list all the plots that have been produced under out/ with
find -name '*.png'
Plots are also available in SVG and PDF formats, e.g.:
wildtype_000000: variant conditions. wildtype is a human readable label, and 000000 is an index amongst the possible wildtype conditions. For example, we can have different simulations with different nutrients, or different DNA sequences. An example of this is shown at run variants.
000000: initial random seed for the initial cell, likely fed to NumPy's np.random.seed
genereation_000000: this will increase with generations if we simulate multiple cells, which is supported by the model
000000: this will presumably contain the cell index within a generation
We also understand that some of the top level directories contain summaries over all cells, e.g. the massFractionSummary.pdf plot exists at several levels of the hierarchy:
Each of thoes four levels of plotOut is generated by a different one of the analysis scripts:
./out/manual/plotOut: generated by python runscripts/manual/analysisVariant.py. Contains comparisons of different variant conditions. We confirm this by looking at the results of run variants.
./out/manual/wildtype_000000/plotOut: generated by python runscripts/manual/analysisCohort.py --variant_index 0. TODO not sure how to differentiate between two different labels e.g. wildtype_000000 and somethingElse_000000. If -v is not given, a it just picks the first one alphabetically. TODO not sure how to automatically generate all of those plots without inspecting the directories.
./out/manual/wildtype_000000/000000/plotOut: generated by python runscripts/manual/analysisMultigen.py --variant_index 0 --seed 0
./out/manual/wildtype_000000/000000/generation_000000/000000/plotOut: generated by python runscripts/manual/analysisSingle.py --variant_index 0 --seed 0 --generation 0 --daughter 0. Contains information about a single specific cell.
