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Blocking occupies unused binding sites on the Western blot membrane. The primary antibody is applied, unbound material is washed away, and a labelled secondary antibody detects retained primary antibody. A fluorescence label emits detectable light after excitation; an enzyme-linked label can instead generate a colored product or light. Washing reduces background but does not prove that remaining binding is selective.

In the original experiment, blocking used excess protein. An anti-ribosome-protein serum followed by labelled secondary antibody produced colored or fluorescence bands; preimmune serum supplied comparison strips. The color readout was an enzyme reaction product, rather than a measurement of target enzyme activity. ^[ref]

Western blot transfer moves separated proteins out of the gel onto a Western blot membrane, using an electric field across the gel thickness. Maintaining close contact preserves the lane pattern. Contact gaps, incomplete removal from the gel and passage through the receiving sheet can change how much protein is retained.

The original 1979 experiment pressed a wetted, $0.45\mu \mathrm{m}$-pore nitrocellulose Western blot membrane against the gel between scouring pads and plastic pipette-tray grids, held by elastic bands. The urea-gel assembly faced the cathode in acidic solution, with $6V/cm$ applied for one hour; the SDS-PAGE variant reversed polarity and used a glycine/methanol buffer solution. Stained gel/blot pairs checked pattern preservation. Corresponding labelled ribosome protein spots from two gels were compared through radioactive decay readouts after combustion. The stained gel remaining after transfer supplied a removal check; a second receiving sheet revealed breakthrough on overloading. These tests supported recovery for the examined urea-gel proteins, within experimental variation, while the SDS-PAGE results showed unequal staining recovery. Preserved band positions therefore did not establish universal quantitative transfer. ^[ref]