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The nervous system regulates visceral movement, glandular secretion, blood flow and coordinated bodily responses, while also influencing nutrition indirectly through those functions. Organic or vegetative life here means activities maintaining the body, such as blood circulation, digestion, pulmonary ventilation, secretion and excretion. It does not designate an independent form of living substance.

One influence is directly motor. Autonomic nerves alter the rate and force of the heart, contract or relax smooth muscle in the intestine, urinary bladder, airways and blood vessels, and coordinate movement with the opening and closure of sphincters. Their effect need not be excitatory: an active vagus nerve can slow the heart, while other pathways accelerate it. In the modern account, sympathetic and parasympathetic effects depend on the target and its receptors; they are not respectively universal accelerator and brake systems. Some organs receive both divisions, while others do not have a simple balanced double supply.^[ref]

A second influence is secretomotor. Activity in appropriate nerves can increase salivary secretion, alter gastric acid secretion and promote sweating. This is distinguishable from moving a duct or changing its calibre. A convincing experiment collects a secretion from a cannulated duct while a nerve is stimulated, rather than inferring secretion from a change of colour or organ size. For example, stimulation of the chorda tympani can evoke fluid from the submandibular gland. The response depends on functioning secretory biological cells; the nerve communicates a command rather than supplying the material constituents of saliva.

A third influence is vasomotor. Changing the calibre of arterioles changes local vascular resistance and perfusion. The classic comparison of an ear before and after interruption of its cervical sympathetic supply illustrates loss of vasoconstrictor tone: the vessels dilate and the ear becomes warmer because more warm blood reaches it. Stimulation of the peripheral cut pathway can produce the converse vascular effect. Warmth therefore need not mean that the local nerves themselves generate more heat. Vascular control also changes the delivery of oxygen and nutrients to a gland or tissue, so it can modify function indirectly.

These outputs are organized by sensory feedback and reflexes. Distension of the intestine can evoke coordinated movement; changes in blood pressure or blood-gas composition influence heart rate and breathing. Local circuits in the enteric nervous system permit some digestive activity without an intact connection to the brain, while longer reflexes involve the spinal cord or brainstem. Central states also matter: the sight or expectation of food can initiate preparatory digestive responses, and fear can alter heart rate, sweating and visceral movement.^[ref]

Somatic motor activity also supports vegetative functions. Breathing uses the respiratory diaphragm and other skeletal muscles; swallowing and continence use coordinated skeletal muscle as well as smooth muscle. Thus organic function cannot be identified solely with the anatomical distribution of the sympathetic nervous system.

The historical idea of a direct trophic influence requires discrimination. A denervation region may change through loss of movement, altered perfusion, loss of protective sensation or changed secretion. Those observations alone do not establish a special nutritive fluid flowing down the nerve. Modern biology recognizes molecular signalling between nerves and their targets, as well as neuroendocrine signalling pathways: the hypothalamus can influence hormone release, and sympathetic input can evoke adrenal medulla secretion. These are mechanisms added to, rather than evidence for an undefined historical nutritive force. A useful experimental design measures the motor, vascular and secretory consequences separately before assigning a residual effect to direct trophic action.

The two pneumogastric nerves are the right and left vagus nerves, the tenth cranial nerves: mixed sensory, branchial motor and parasympathetic pathways from the medulla oblongata to the neck, thorax and abdomen. A useful description separates their apparent origin at the surface of the brain from the origins and terminations of their component fibres.

Rootlets emerge in the groove behind the inferior olive, between the glossopharyngeal nerve above and the accessory rootlets below. Branchial motor fibres arise chiefly in the nucleus ambiguus; preganglionic parasympathetic fibres arise in the dorsal motor nucleus of the vagus and, particularly for cardiac control, the nucleus ambiguus. Visceral sensory fibres have their cell bodies chiefly in the inferior vagal ganglion and terminate centrally in the nucleus of the solitary tract; somatic sensory fibres associated with the superior vagal ganglion project to the spinal trigeminal nucleus. Consequently a sensory fibre is not accurately described as originating in a motor nucleus simply because its peripheral nerve emerges nearby.^[ref]

Each vagus nerve leaves the skull through the jugular foramen, with the glossopharyngeal nerve and accessory nerve. It bears the small superior vagal ganglion at the foramen and the larger inferior vagal ganglion below it. Connections include communications with adjacent cranial nerves and the cervical sympathetic nervous system. Traditional descriptions assign fibres joining the vagus nerve from the cranial part of the accessory nerve to the latter peripheral nerve; their modern classification is more nuanced and does not change the peripheral branches being described. In the neck the vagus nerve descends in the carotid sheath, behind and between the internal jugular vein and the internal, then common, carotid artery.

Its meningeal and auricular branches supply small sensory territories of the cranial covering and external ear. Pharyngeal branches contribute to the pharyngeal plexus, supplying much of the soft palate and pharynx; the stylopharyngeus muscle belongs to the glossopharyngeal nerve and the tensor veli palatini muscle to the mandibular division of the trigeminal nerve. The internal branch of the superior laryngeal nerve supplies sensation above the vocal folds; its external branch supplies the cricothyroid muscle. The recurrent laryngeal nerve supplies the other intrinsic laryngeal muscles and sensation below the vocal folds. The right recurrent laryngeal nerve loops beneath the right subclavian artery; the left loops under the aortic arch beside the ligamentum arteriosum. Both return towards the larynx near the groove between trachea and oesophagus.^[ref]

In the thorax, both vagus nerves pass behind the roots of the lungs, contrasting with the anterior course of the phrenic nerves. Cardiac branches join the cardiac plexus; pulmonary branches join the pulmonary plexus. The trunks break up into the oesophageal plexus, then collect principally as an anterior trunk derived from the left vagus nerve and a posterior trunk derived from the right. Through the oesophageal hiatus they reach the stomach; hepatic and coeliac branches distribute to abdominal viscera. Their parasympathetic territory includes foregut and midgut derivatives, extending into the proximal colon, rather than every abdominal and pelvic organ.^[ref] This extensive distribution explains why the level of experimental section is indispensable information.

The main consequences of section can be organized by the interrupted functions:

A discriminating historical experiment would record respiratory movements and heart rate before and after section, distinguish unilateral from bilateral section, and compare an intact airway with an airway bypass. A tracheal cannula can separate obstruction at the glottis from changes in the respiratory rhythm, while the central-versus-peripheral stimulation comparison separates incoming reflex traffic from outgoing motor effects. Later separate-lung recordings confirmed that a change following unilateral section could affect both lungs, supporting a central reflex interpretation rather than simple local paralysis.^[ref] The gastric distinction is also borne out by measurements of persistent acidity after surgical vagotomy, despite major reductions in stimulated gastric acid secretion.^[ref]