The Cellular Potts Model (CPM) is a computational modeling framework used primarily in the fields of biological and materials sciences to simulate the behavior of complex systems, particularly those involving cellular structures. It was introduced by Sorger and colleagues in the early 1990s and has since been widely adopted for various applications, especially in modeling biological phenomena like cell aggregation, tissue formation, and morphogenesis.
Direct Simulation Monte Carlo (DSMC) is a numerical method used to simulate the behavior of gas flows, particularly in rarefied gas dynamics where traditional continuum fluid dynamics approaches (like the Navier-Stokes equations) become inadequate. DSMC is particularly useful in scenarios where the mean free path of the gas molecules is comparable to the characteristic length scale of the flow, such as in microfluidics, high-altitude flight, and vacuum environments.
The EPS Statistical and Nonlinear Physics Prize is an award given by the European Physical Society (EPS) to recognize outstanding contributions in the fields of statistical physics and nonlinear phenomena. This prize honors researchers who have made significant advancements or discoveries in these areas, which encompass a wide range of topics including complex systems, phase transitions, and nonlinear dynamics. The award aims to celebrate the important role of statistical mechanics and nonlinear science in understanding and modeling physical systems.
A characteristic state function is a type of thermodynamic property that depends only on the state of a system and not on the path taken to reach that state. In other words, these functions are determined solely by the condition of the system (such as temperature, pressure, volume, and number of particles) at a given moment, and they provide key information about the system's thermodynamic state.
Entropy of network ensembles refers to a concept in statistical physics and network theory that quantifies the amount of uncertainty or disorder in a particular ensemble of networks. In this context, a "network ensemble" is a collection of networks that share certain properties or constraints, such as degree distribution, clustering coefficient, or overall connectivity structure. ### Key Concepts: 1. **Network Ensembles**: - These are groups of networks that are generated under specific statistical rules.
The Gaussian free field (GFF) is a mathematical object commonly studied in the fields of probability theory, statistical mechanics, and quantum field theory. It serves as a foundational model for understanding various phenomena in physics and mathematics due to its intrinsic properties and connections to Gaussian processes.
Gibbs' paradox highlights an apparent contradiction in statistical mechanics regarding the entropy of mixing identical particles or gases. It arises when considering the entropy change associated with mixing two gases or ensembles of particles that are indistinguishable. In classical thermodynamics, when two different gases are mixed, the entropy of the system increases due to the increased number of available microstates.
Cluster expansion is a mathematical and computational technique used to analyze and represent complex systems, particularly in statistical mechanics, statistical physics, and combinatorial optimization. The method involves expressing a system's properties or behavior in terms of sums over clusters, or groups of interacting components. This approach can simplify the study of many-particle systems by allowing one to break down the interactions into manageable parts.
Configuration entropy refers to the measure of the number of microstates (specific arrangements) corresponding to a given macrostate (overall state) of a system. In other words, it quantifies the degree of disorder or randomness associated with a particular arrangement of particles in a system. In thermodynamics and statistical mechanics, entropy is often associated with the level of uncertainty or disorder within a system. Specifically, configuration entropy appears in contexts where the arrangement of particles or components influences the system's properties.
The Coulomb gap refers to an energy gap that arises in disordered electronic systems, particularly in granular or amorphous materials where localized charge carriers interact weakly with one another. This concept is often discussed in the context of insulating materials and systems near the metal-insulator transition.
Electronic entropy is a concept in condensed matter physics and materials science that relates to the distribution and arrangement of electronic states within a material. It can be understood in the context of thermodynamics and statistical mechanics, where entropy is a measure of disorder or the number of possible microstates that correspond to a given macrostate.
The Einstein relation, in the context of kinetic theory and statistical mechanics, relates the diffusion coefficient of particles to their mobility. It provides a connection between the transport properties of particles (like diffusion) and their response to external forces.
Mean-field particle methods are a class of computational techniques used to simulate systems with large numbers of interacting particles, particularly in physics, chemistry, and biological systems. These methods are grounded in the mean-field theory, which simplifies the complex interactions in high-dimensional systems by approximating the effect of all other particles on a given particle as an average or "mean" effect. ### Key Concepts 1.
Mean-field theory (MFT) is a statistical physics and mathematical physics approach that simplifies complex many-body systems by averaging the effects of all individual particles or entities on one another. In this framework, instead of dealing with the complicated interactions of every particle in a system, the average effect of all particles is considered to define a "mean field" that influences each particle.
A quasistatic process is a thermodynamic process that occurs so slowly that the system remains in near-equilibrium throughout the process. In other words, at each stage of the process, the system is close to a state of equilibrium, allowing for a clear definition of properties like temperature and pressure.
Fick's laws of diffusion describe how substances diffuse, providing a quantitative framework for understanding the movement of particles within a medium. There are two main laws: ### Fick's First Law: This law states that the flux of a substance (the amount of substance passing through a unit area per unit time) is proportional to the concentration gradient.
The fundamental thermodynamic relation is a central concept in thermodynamics that relates changes in internal energy to changes in entropy and volume. It is derived from the first and second laws of thermodynamics and describes the changes in a system’s state as it exchanges heat and work with its surroundings.
The gas constant, commonly denoted as \( R \), is a physical constant that appears in various fundamental equations in thermodynamics, particularly in the ideal gas law. It relates the energy scale to the temperature scale for ideal gases.
A two-dimensional liquid is a state of matter characterized by its two-dimensional nature, where the constituent particles (atoms, molecules, or other entities) are restricted to move in a plane rather than in three-dimensional space. This concept arises in various fields of physics and materials science, particularly in the study of systems such as monolayers of materials or certain types of colloids. The properties of two-dimensional liquids can differ significantly from those of their three-dimensional counterparts.
Griffiths' inequality is a result from statistical mechanics and probability theory, specifically relating to the behavior of certain random configurations in lattice systems. The inequality is usually stated in the context of a lattice model of statistical mechanics, notably in the study of spins or percolation. In simple terms, Griffiths' inequality provides a way to compare the probabilities of different configurations in statistical systems, particularly under conditions of positivity or negativity related to interactions among particles (or spins).
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 2. You can publish local OurBigBook lightweight markup files to either OurBigBook.com or as a static website.Figure 3. Visual Studio Code extension installation.Figure 5. . You can also edit articles on the Web editor without installing anything locally. Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact