GitHub repo Updated 2025-07-16
bsub get job stdout and stderr Updated 2025-07-16
By default, LSF only sends you an email with the stdout and stderr included in it, and does not show or store anything locally.
One option to store things locally is to use:
bsub -oo stdout.log -eo stderr.log 'echo myout; echo myerr 1>&2'
as documented at:Or to use files with the job id in them:
bsub -oo %J.out -eo %J.err 'echo myout; echo myerr 1>&2'
By default bsub -oo:
  • also contains the LSF metadata in addition to the actual submitted process stdout
  • prevents the completion email from being sent
To get just the stdout to the file, use bsub -N -oo which:
  • stores only stdout on the file
  • re-enables the completion email
as mentioned at:
Another option is to run with the bsub -I option:
bsub -I 'echo a;sleep 1;echo b;sleep 1;echo c'
This immediately prints stdout and stderr to the terminal.
EC2 instance type Updated 2025-07-16
Amazon's informtion about their own intances is so bad and non-public that this was created: instances.vantage.sh/
vCPU Updated 2025-07-16
EC2 instance store volume Updated 2025-07-16
Large but ephemeral storage for EC2 instances. Predetermined by the EC2 instance type. Stays in the local server disk. Not automatically mounted.
three.js Updated 2025-07-16
SPARQL tutorial Updated 2025-07-16
In this tutorial, we will use the Jena SPARQL hello world as a starting point. Tested on Apache Jena 4.10.0.
Basic query on rdf/vcard.ttl RDF Turtle data to find the person with full name "John Smith":
sparql --data=rdf/vcard.ttl --query=<( printf '%s\n' 'SELECT ?x WHERE { ?x <http://www.w3.org/2001/vcard-rdf/3.0#FN> "John Smith" }')
Output:
---------------------------------
| x                             |
=================================
| <http://somewhere/JohnSmith/> |
---------------------------------
To avoid writing http://www.w3.org/2001/vcard-rdf/3.0# a billion times as queries grow larger, we can use the PREFIX syntax:
sparql --data=rdf/vcard.ttl --query=<( printf '%s\n' '
PREFIX vc: <http://www.w3.org/2001/vcard-rdf/3.0#>
SELECT ?x
WHERE { ?x vc:FN "John Smith" }
')
Output:
---------------------------------
| x                             |
=================================
| <http://somewhere/JohnSmith/> |
---------------------------------
Bibliography:
ROCm on Ubuntu Updated 2025-07-16
Tested on Ubuntu 23.10 with P14s:
sudo apt install hipcc
git clone https://github.com/ROCm/HIP-Examples
cd HIP-Examples/HIP-Examples-Applications/HelloWorld
make
TODO fails with:
/bin/hipcc -g   -c -o HelloWorld.o HelloWorld.cpp
clang: error: cannot find ROCm device library for gfx1103; provide its path via '--rocm-path' or '--rocm-device-lib-path', or pass '-nogpulib' to build without ROCm device library
make: *** [<builtin>: HelloWorld.o] Error 1

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