One of the most beautiful molecular machines known!
The first one with such complexity that was uncovered.
The ATP synthase complex is so large that Power, Sex, Suicide by Nick Lane (2006) page 123 contains a cryoEM image of several ATP synthases on small membrane vesicles, this is the paper: pubs.acs.org/doi/abs/10.1021/bi00437a031# under a fucking paywall.
ATP synthase in action by HarvardX (2017)
Source. Richard Feynman Quantum Electrodynamics Lecture at University of Auckland (1979) mentions it several times.
This was one of the first two great successes of quantum electrodynamics, the other one being the Lamb shift.
In youtu.be/UKbp85zpdcY?t=52 from freeman Dyson Web of Stories interview (1998) Dyson mentions that the original key experiment was from Kusch and Foley from Columbia University, and that in 1948, Julian Schwinger reached the correct value from his calculations.
Apparently first published at The Magnetic Moment of the Electron by Kusch and Foley (1948).
Bibliography:
- www.youtube.com/watch?v=Ix-3LQhElvU Anomalous Magnetic Moment Of The Electron | One Loop Quantum Correction | Quantum Electrodynamics by Dietterich Labs (2019)
Advanced quantum field theory lecture by Tobias Osborne (2017) Lecture 2 by
Ciro Santilli 40 Updated 2025-07-16
- www.youtube.com/watch?v=-_qNKbwM_eE Unsolved: Yang-Mills existence and mass gap by J Knudsen (2019). Gives 10 key points, but the truly hard ones are too quick. He knows the thing though.
Yang-Mills 1 by David Metzler (2011)
Source. A bit disappointing, too high level, with very few nuggests that are not Googleable withing 5 minutes.
Breakdown:
- 1 www.youtube.com/watch?v=j3fsPHnrgLg: too basic
- 2 www.youtube.com/watch?v=br6OxCLyqAI?t=569: mentions groups of Lie type in the context of classification of finite simple groups. Each group has a little diagram.
- 3 youtu.be/1baiIxKKQlQ?list=PL613A31A706529585&t=728 the original example of a local symmetry was general relativity, and that in that context it can be clearly seen that the local symmetry is what causes "forces" to appear
- youtu.be/1baiIxKKQlQ?list=PL613A31A706529585&t=933 local symmetry gives a conserved current. In the case of electromagnetism, this is electrical current. This was the only worthwhile thing he sad to 2021 Ciro. Summarized at: local symmetries of the Lagrangian imply conserved currents.
- 4 youtu.be/5ljKcWm7hoU?list=PL613A31A706529585&t=427 electromagnetism has both a global symmetry (special relativity) but also local symmetry, which leads to the conservation of charge current and forces.lecture 3 properly defines a local symmetry in terms of the context of the lagrangian density, and explains that the conservation of currents there is basically the statement of Noether's theorem in that context.
After a translation between linear and physical address happens, it is stored on the TLB. For example, a 4 entry TLB starts in the following state:
valid linear physical
----- ------ --------
> 0 00000 00000
0 00000 00000
0 00000 00000
0 00000 00000The
> indicates the current entry to be replaced.And after a page linear address and after a second translation of
00003 is translated to a physical address 00005, the TLB becomes: valid linear physical
----- ------ --------
1 00003 00005
> 0 00000 00000
0 00000 00000
0 00000 0000000007 to 00009 it becomes: valid linear physical
----- ------ --------
1 00003 00005
1 00007 00009
> 0 00000 00000
0 00000 00000When TLB is filled up, older addresses are overwritten. Just like CPU cache, the replacement policy is a potentially complex operation, but a simple and reasonable heuristic is to remove the least recently used entry (LRU).
With LRU, starting from state:adding
valid linear physical
----- ------ --------
> 1 00003 00005
1 00007 00009
1 00009 00001
1 0000B 000030000D -> 0000A would give: valid linear physical
----- ------ --------
1 0000D 0000A
> 1 00007 00009
1 00009 00001
1 0000B 00003Using the TLB makes translation faster, because the initial translation takes one access per TLB level, which means 2 on a simple 32 bit scheme, but 3 or 4 on 64 bit architectures.
The TLB is usually implemented as an expensive type of RAM called content-addressable memory (CAM). CAM implements an associative map on hardware, that is, a structure that given a key (linear address), retrieves a value.
Mappings could also be implemented on RAM addresses, but CAM mappings may required much less entries than a RAM mapping.
linear physical
------ --------
00000 00001
00001 00010
00010 00011
FFFFF 00000When the process changes,
cr3 change to point to the page table of the new current process.A simple and naive solution would be to completely invalidate the TLB whenever the
cr3 changes.However, this is would not be very efficient, because it often happens that we switch back to process 1 before process 2 has completely used up the entire TLB cache entries.
The solution for this is to use so called "Address Space Identifiers" (ASID) as mentioned in sources such as:
Basically, the OS assigns a different ASID for each process, and then TLB entries are automatically also tagged with that ASID. This way when the process makes an access, the TLB can determine if a hit is actually for the current process, or if it is an old address coincidence with another process.
Information about ARM paging can be found at: cirosantilli.com/linux-kernel-module-cheat#arm-paging
Convert virtual addresses to physical from user space with
/proc/<pid>/pagemap and from kernel space with virt_to_phys:Dump all page tables from userspace with
/proc/<pid>/maps and /proc/<pid>/pagemap:Read and write physical addresses from userspace with
/dev/mem:The Linux Kernel reserves two zones of virtual memory:
- one for kernel memory
- one for programs
The exact split is configured by
CONFIG_VMSPLIT_.... By default:- on 32-bit:
- on 64-bit: currently only 48-bits are actually used, split into two equally sized disjoint spaces. The Linux kernel just assigns:
- the bottom part to processes
00000000 00000000to008FFFFF FFFFFFFF - the top part to the kernel:
FFFF8000 00000000toFFFFFFFF FFFFFFFF, like this:------------------ FFFFFFFF Kernel ------------------ C0000000 (not addressable) ------------------ BFFFFFFF Process ------------------ 00000000
- the bottom part to processes
Kernel memory is also paged.
In previous versions, the paging was continuous, but with HIGHMEM this changed.
There is no clear physical memory split: stackoverflow.com/questions/30471742/physical-memory-userspace-kernel-split-on-linux-x86-64
For each process, the virtual address space looks like this:
------------------ 2^32 - 1
Stack (grows down)
v v v v v v v v v
------------------
(unmapped)
------------------ Maximum stack size.
(unmapped)
-------------------
mmap
-------------------
(unmapped)
-------------------
^^^^^^^^^^^^^^^^^^^
brk (grows up)
-------------------
BSS
-------------------
Data
-------------------
Text
-------------------
------------------- 0The kernel maintains a list of pages that belong to each process, and synchronizes that with the paging.
If the program accesses memory that does not belong to it, the kernel handles a page-fault, and decides what to do:
When an ELF file is loaded by the kernel to start a program with the
exec system call, the kernel automatically registers text, data, BSS and stack for the program.The
brk and mmap areas can be modified by request of the program through the brk and mmap system calls. But the kernel can also deny the program those areas if there is not enough memory.brk and mmap can be used to implement malloc, or the so called "heap".mmap is also used to load dynamically loaded libraries into the program's memory so that it can access and run it.Stack allocation: stackoverflow.com/questions/17671423/stack-allocation-for-process
Calculating exact addresses Things are complicated by:
- Address Space Layout Randomization.
- the fact that environment variables, CLI arguments, and some ELF header data take up initial stack space: unix.stackexchange.com/questions/145557/how-does-stack-allocation-work-in-linux/239323#239323
Why the text does not start at 0: stackoverflow.com/questions/14795164/why-do-linux-program-text-sections-start-at-0x0804800-and-stack-tops-start-at-0
Those page faults only happen when a process tries to write to the page, and not read from it.
When Linux forks a process:
- instead of copying all the pages, which is unnecessarily costly, it makes the page tables of the two process point to the same physical address.
- it marks those linear addresses as read-only
- whenever one of the processes tries to write to a page, the makes a copy of the physical memory, and updates the pages of the two process to point to the two different physical addresses
In
v4.2, look under arch/x86/:include/asm/pgtable*include/asm/page*mm/pgtable*mm/page*
There seems to be no structs defined to represent the pages, only macros:
include/asm/page_types.h is specially interesting. Excerpt:#define _PAGE_BIT_PRESENT 0 /* is present */
#define _PAGE_BIT_RW 1 /* writeable */
#define _PAGE_BIT_USER 2 /* userspace addressable */
#define _PAGE_BIT_PWT 3 /* page write through */ x86 Paging Tutorial Single level paging scheme visualization by
Ciro Santilli 40 Updated 2025-07-16
This is how the memory could look like in a single level paging scheme:
Links Data Physical address
+-----------------------+ 2^32 - 1
| |
. .
| |
+-----------------------+ page0 + 4k
| data of page 0 |
+---->+-----------------------+ page0
| | |
| . .
| | |
| +-----------------------+ pageN + 4k
| | data of page N |
| +->+-----------------------+ pageN
| | | |
| | . .
| | | |
| | +-----------------------+ CR3 + 2^20 * 4
| +--| entry[2^20-1] = pageN |
| +-----------------------+ CR3 + 2^20 - 1 * 4
| | |
| . many entires .
| | |
| +-----------------------+ CR3 + 2 * 4
| +--| entry[1] = page1 |
| | +-----------------------+ CR3 + 1 * 4
+-----| entry[0] = page0 |
| +-----------------------+ <--- CR3
| | |
| . .
| | |
| +-----------------------+ page1 + 4k
| | data of page 1 |
+->+-----------------------+ page1
| |
. .
| |
+-----------------------+ 0Notice that:
- the CR3 register points to the first entry of the page table
- the page table is just a large array with 2^20 page table entries
- each entry is 4 bytes big, so the array takes up 4 MiB
- each page table contains the physical address a page
- each page is a 4 KiB aligned 4 KiB chunk of memory that user processes may use
- we have 2^20 table entries. Since each page is 4 KiB == 2^12, this covers the whole 4 GiB (2^32) of 32-bit memory
x86 Paging Tutorial Single level paging scheme numerical translation example by
Ciro Santilli 40 Updated 2025-07-16
Suppose that the OS has setup the following page tables for process 1:and for process 2:
entry index entry address page address present
----------- ------------------ ------------ -------
0 CR3_1 + 0 * 4 0x00001 1
1 CR3_1 + 1 * 4 0x00000 1
2 CR3_1 + 2 * 4 0x00003 1
3 CR3_1 + 3 * 4 0
...
2^20-1 CR3_1 + 2^20-1 * 4 0x00005 1entry index entry address page address present
----------- ----------------- ------------ -------
0 CR3_2 + 0 * 4 0x0000A 1
1 CR3_2 + 1 * 4 0x12345 1
2 CR3_2 + 2 * 4 0
3 CR3_2 + 3 * 4 0x00003 1
...
2^20-1 CR3_2 + 2^20-1 * 4 0xFFFFF 1When process 1 tries to access a linear address, this is the physical addresses that will be actually accessed:
linear physical
--------- ---------
00000 001 00001 001
00000 002 00001 002
00000 003 00001 003
00000 FFF 00001 FFF
00001 000 00000 000
00001 001 00000 001
00001 FFF 00000 FFF
00002 000 00003 000
FFFFF 000 00005 000To switch to process 2, the OS simply sets
cr3 to CR3_2, and now the following translations would happen:linear physical
--------- ---------
00000 002 0000A 002
00000 003 0000A 003
00000 FFF 0000A FFF
00001 000 12345 000
00001 001 12345 001
00001 FFF 12345 FFF
00004 000 00003 000
FFFFF 000 FFFFF 000Step-by-step translation for process 1 of logical address
0x00000001 to physical address 0x00001001:- split the linear address into two parts:
| page (20 bits) | offset (12 bits) | - look into Page table 1 because
cr3points to it. - The hardware knows that this entry is located at RAM address
CR3 + 0x00000 * 4 = CR3:
*0x00000because the page part of the logical address is0x00000
*4because that is the fixed size in bytes of every page table entry - since it is present, the access is valid
- by the page table, the location of page number
0x00000is at0x00001 * 4K = 0x00001000. - to find the final physical address we just need to add the offset:
00001 000 + 00000 001 --------- 00001 001because00001is the physical address of the page looked up on the table and001is the offset.The offset is always simply added the physical address of the page. - the hardware then gets the memory at that physical location and puts it in a register.
Another example: for logical address
0x00001001:- the page part is
00001, and the offset part is001 - the hardware knows that its page table entry is located at RAM address:
CR3 + 1 * 4(1because of the page part), and that is where it will look for it - it finds the page address
0x00000there - so the final address is
0x00000 * 4k + 0x001 = 0x00000001
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