Eukaryotic transcription is the process by which the genetic information encoded in DNA is transcribed into messenger RNA (mRNA) within the cells of eukaryotic organisms (organisms whose cells have a nucleus, such as animals, plants, fungi, and protists). This process is essential for gene expression, allowing cells to produce proteins that perform various functions.
Expected Progeny Difference (EPD) is a **genetic estimate** used in animal breeding to predict the performance of offspring based on the genetics of their parents. It is particularly common in livestock breeding, including cattle, sheep, and pigs.
An expression vector is a plasmid or other vector used to introduce and express a specific gene within a host cell, often for the purpose of producing a protein. These vectors are essential tools in molecular biology and biotechnology. Key features of expression vectors include: 1. **Promoter Region**: This is a sequence that drives the transcription of the gene of interest. Depending on the host organism (bacteria, yeast, mammalian cells, etc.), different promoters may be used to ensure optimal expression levels.
Fluorescence is a phenomenon in which a substance absorbs light or other electromagnetic radiation and then re-emits light of a longer wavelength. In the life sciences, fluorescence is a powerful and widely used tool for various applications, particularly in the fields of biology, biochemistry, and medical research. Here are some key aspects of fluorescence in the life sciences: 1. **Fluorophores**: Molecules that exhibit fluorescence are called fluorophores.
Genome-wide CRISPR-Cas9 knockout screens are powerful techniques used in genomics and functional genomics to systematically investigate the functions of genes across the entire genome. Here’s an overview of the process and its significance: ### Overview: 1. **CRISPR-Cas9 Technology**: The CRISPR-Cas9 system is a revolutionary gene-editing tool that allows scientists to make precise changes to the DNA of living organisms.
Fragment Molecular Orbital (FMO) theory is a computational approach used in quantum chemistry to analyze and predict the electronic structure and properties of large molecular systems by breaking them down into smaller, more manageable pieces, or "fragments." This method is particularly useful for studying complex molecular assemblies, such as proteins, polymers, and crystals, where dealing with the entire system at once can be computationally prohibitive.
GUIDE-Seq (Genome-wide Unbiased Identification of DNGs Enabled by Sequencing) is a technique used for the detection and identification of double-strand breaks (DSBs) in the genome caused by targeted genome editing methods, such as CRISPR/Cas9. The method is particularly useful for mapping the sites of DSBs generated by CRISPR, allowing researchers to evaluate the specificity and efficiency of gene editing events.
Gene nomenclature refers to the system of naming genes to provide a standardized framework that allows for the consistent identification and classification of genes across different species and studies. This is important because it facilitates communication among researchers, ensures clarity in scientific literature, and helps avoid confusion that can arise from synonyms, orthologs, or different naming conventions.
Gel extraction is a molecular biology technique used to purify DNA or RNA fragments from an agarose gel after electrophoresis. This process is essential when researchers need to isolate specific nucleic acid fragments for further analysis, cloning, or other applications. The general steps involved in gel extraction are as follows: 1. **Electrophoresis**: Nucleic acids are separated by size using gel electrophoresis. The gel is typically made from agarose and contains wells where the samples are loaded.
GeneXpert Infinity is a diagnostic testing platform developed by Cepheid that is used for rapid molecular testing. It is part of the GeneXpert system, which is known for its ability to perform real-time PCR (polymerase chain reaction) testing. The platform is designed to provide quick and accurate results for a variety of infectious diseases, including tuberculosis, respiratory infections, and sexually transmitted infections, among others.
Genetically modified food (GM food) refers to food products that have been derived from organisms whose genetic material (DNA) has been altered using genetic engineering techniques. This process is done to introduce new traits or characteristics to the organism, such as improved resistance to pests or diseases, enhanced nutritional content, or increased shelf life. The most common method of genetic modification involves the use of recombinant DNA technology, where specific genes from one organism are inserted into the genome of another.
A genomic library is a collection of cloned DNA fragments that represent the entire genome of a specific organism. It serves as a valuable resource for genetic research and biotechnology applications. Here are some key points about genomic libraries: 1. **Construction**: To create a genomic library, the DNA of the organism is isolated and then fragmented into smaller pieces, typically using restriction enzymes or mechanical shearing.
The term "ideotype" typically refers to a conceptual model or idealized representation of an organism or plant that embodies the most desirable traits or characteristics for a particular environment or purpose. In the context of agriculture and plant breeding, an ideotype serves as a guideline for selecting or engineering plants that will have specific traits advantageous for yield, resistance to disease, adaptability to climate, or other agronomic parameters.
Human genetic enhancement refers to the application of biotechnology and genetic engineering techniques to improve human characteristics and capabilities beyond what is considered normal or typical. This can involve the modification of genetic material to enhance physical attributes, cognitive abilities, emotional intelligence, or overall health. Some common areas of focus in human genetic enhancement include: 1. **Physical Characteristics**: Enhancements could target traits like height, strength, or appearance.
The human interactome is a comprehensive network that represents the complex interactions among various biological molecules within human cells and tissues. It encompasses the connections between proteins, genes, RNA molecules, and other cellular components. The term "interactome" generally refers to all the physical interactions that occur in a biological system, and in the case of humans, it often focuses on protein-protein interactions (PPIs) as a core aspect.
A hybridization assay is a molecular biology technique used to detect and quantify specific nucleic acid sequences (DNA or RNA) within a sample. The fundamental principle of hybridization assays involves the formation of stable complexes between complementary nucleic acid strands, a process known as hybridization. These assays are pivotal in various applications, including gene expression analysis, genotyping, mutation detection, and the diagnosis of infectious diseases. **Key Components and Concepts:** 1.
Immunoelectrophoresis is a laboratory technique used to separate and identify proteins, particularly antibodies and antigens, based on their charge and size. This method combines two techniques: electrophoresis and immunodiffusion. ### Procedure Overview: 1. **Sample Preparation**: A sample containing proteins is prepared, which may include serum, urine, or other biological fluids.
The Jumping library refers to Julia's Jump package, which stands for "Julia for Mathematical Programming." It's a powerful modeling language and optimization library used primarily for formulating and solving linear, mixed-integer, and nonlinear optimization problems. Jump provides a high-level interface that allows users to define optimization problems in a user-friendly way, creating models using abstractions that are closer to mathematical notation.
An "Index of Molecular Biology Articles" typically refers to a curated list or database of research articles, reviews, and papers focused on topics within molecular biology. This index can serve several purposes: 1. **Organization**: It helps researchers and students find relevant literature for their studies by categorizing articles based on various criteria such as topic, author, date of publication, journal, etc.
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 3. Visual Studio Code extension installation.Figure 4. Visual Studio Code extension tree navigation.Figure 5. Web editor. You can also edit articles on the Web editor without installing anything locally.Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.Video 4. OurBigBook Visual Studio Code extension editing and navigation demo. Source. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





