PTPN22 (Protein Tyrosine Phosphatase, Non-Receptor Type 22) is a gene that encodes a protein involved in the regulation of immune system responses. This protein is a member of the protein tyrosine phosphatase (PTP) family, which plays essential roles in various cellular processes by dephosphorylating tyrosine residues in proteins.
Real-time polymerase chain reaction (RT-PCR), also known as quantitative PCR (qPCR), is a laboratory technique used to amplify and simultaneously quantify a specific DNA target in a sample. It combines the amplification steps of traditional polymerase chain reaction (PCR) with the ability to measure the amount of DNA produced in real-time during the amplification process.
Retroviruses are a family of RNA viruses that replicate in a host cell through the process of reverse transcription. Upon entering a host cell, retroviruses convert their single-stranded RNA genome into double-stranded DNA using an enzyme called reverse transcriptase. This DNA can then integrate into the host cell's genome, allowing the virus to replicate along with the host's own DNA when the host cell divides.
Phosphodiesterase 3 (PDE3) refers to a specific enzyme that is part of the phosphodiesterase family, which plays a crucial role in cellular signaling by breaking down phosphodiester bonds in cyclic nucleotides such as cyclic adenosine monophosphate (cAMP) and cyclic guanosine monophosphate (cGMP).
Photodegradation is a process by which chemical compounds break down when exposed to light, particularly ultraviolet (UV) radiation. This phenomenon is important in various fields, including environmental science, materials science, and photochemistry, as it affects the stability and lifespan of materials, the degradation of pollutants, and the breakdown of organic compounds. In the context of the environment, photodegradation plays a significant role in the natural degradation of pollutants such as plastics, pesticides, and organic waste.
Plasmid preparation, also known as plasmid isolation or plasmid extraction, is a molecular biology technique used to isolate and purify plasmid DNA from bacterial cells. Plasmids are small, circular DNA molecules that are separate from chromosomal DNA and can replicate independently. They are commonly used in genetic engineering, cloning, and various applications in biotechnology.
Polymerase chain reaction (PCR) optimization is the process of fine-tuning various reaction conditions to achieve maximum efficiency, specificity, and yield in the amplification of DNA. PCR is a widely used technique to amplify specific DNA sequences, and its success relies on several key parameters that can be modified.
Protein Misfolding Cyclic Amplification (PMCA) is a laboratory technique used to amplify misfolded proteins, particularly prions, which are infectious agents composed primarily of protein. This method takes advantage of the unique property of prion proteins to induce misfolding in normally folded proteins, allowing for the detection and study of these pathogenic forms.
Protofection is a term used in the field of genetics and molecular biology, referring to a technique for introducing nucleic acids (such as DNA or RNA) into cells, particularly in the context of plant cells. It is typically associated with the transformation of plant cells, allowing researchers to study gene function, produce genetically modified plants, or explore gene editing technologies. The term "protofection" may also be applied in broader contexts within various research areas that involve the transfer of genetic material into cells.
Ribosomal intergenic spacer analysis (RISA) is a molecular biology technique used for the characterization and differentiation of microbial communities, particularly in ecological and environmental studies. RISA primarily focuses on the ribosomal DNA (rDNA) of organisms, specifically the intergenic spacer (IGS) region found between the genes coding for ribosomal RNA (rRNA), which is highly variable among different species.
Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a class of biologically active peptides that are produced by ribosomal translation of genes and subsequently undergo various post-translational modifications. ### Key Features of RiPPs: 1. **Ribosomal Synthesis**: RiPPs are encoded by genes and synthesized by ribosomes. This differentiates them from other peptides and proteins that may be synthesized via non-ribosomal pathways (e.
RNA therapeutics are a class of treatments that utilize RNA molecules to modulate gene expression and target various diseases, including genetic disorders, cancers, and viral infections. They harness the natural processes of RNA in the body to influence cellular function and biological pathways.
The restriction-modification (R-M) system is a biological mechanism found in many bacteria and archaea that serves as a defense against foreign DNA, such as that from viruses (bacteriophages) or plasmids. The system is composed of two main components: 1. **Restriction Enzymes (Restriction endonucleases)**: These enzymes scan DNA for specific sequences (restriction sites) and cut the DNA at or near these sites.
Short interspersed nuclear elements (SINEs) are a class of non-coding repetitive DNA sequences found in the genomes of many eukaryotic organisms, including humans. They are a type of transposable element, meaning they can move within the genome, and they are characterized by their relatively short length, typically ranging from about 100 to 300 base pairs.
Single-nucleotide polymorphism (SNP) is a variation at a single position in a DNA sequence among individuals. In other words, it's a change in a single nucleotide—the building blocks of DNA (adenine [A], cytosine [C], guanine [G], or thymine [T])—that can occur in the genome. SNPs can manifest in several ways, typically as a substitution of one nucleotide for another.
Single-strand conformation polymorphism (SSCP) is a molecular biology technique used to detect genetic variation among single-stranded DNA (ssDNA) fragments. The fundamental principle behind SSCP is that different sequences of DNA can adopt distinct three-dimensional conformations when they are in a single-stranded state. These conformational differences can be caused by variations such as point mutations, insertions, or deletions.
Toeprinting assay is a molecular biology technique used to study the process of translation initiation in messenger RNA (mRNA) molecules. It helps researchers identify the specific binding sites and interactions between ribosomes and mRNA during the translation process. The basic principle of the toeprinting assay involves the use of reverse transcription.
Small interfering RNA (siRNA) is a class of double-stranded RNA molecules, typically about 20 to 25 base pairs in length, that play a crucial role in the process of RNA interference (RNAi). siRNA is involved in the regulation of gene expression and the defense against viral infections and transposable elements in cells.
Southwestern blotting is a molecular biology technique used to identify specific DNA-binding proteins within a complex mixture of proteins. The technique combines aspects of both Southern blotting (which is used for detecting specific DNA sequences) and Western blotting (which is used for detecting specific proteins). Here’s a brief overview of the steps involved in Southwestern blotting: 1. **Protein Extraction**: Proteins are extracted from cells or tissues, often using a buffer that preserves protein structure and functionality.
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 3. Visual Studio Code extension installation.Figure 4. Visual Studio Code extension tree navigation.Figure 5. Web editor. You can also edit articles on the Web editor without installing anything locally.Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.Video 4. OurBigBook Visual Studio Code extension editing and navigation demo. Source. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





