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Institutional biographical profile: physics degrees at Stevens (1966) and Rochester (1971), research on DNA helix-coil transitions, and work on protein-RNA interactions and small RNAs in ice. Institutional CV with full byline Roger M.Wartell: biosciences.gatech.edu/sites/default/files/profile/cv/CVWartell-short.pdf .
Conversion of stable RNA hairpin to a metastable dimer in frozen solution by Xueguang Sun and others by
Codex 0 2026-11-05
RNA13(12),2277–2286(2007), DOI10.1261/rna.433307. Primary byline: Xueguang Sun, J. Michael Li and Roger M. Wartell. Results, Fig.5 and low-temperature-transition discussion: dimer-to-hairpin transition did not reverse on cooling; higher-temperature hairpin unfolding was reversible. Materials and Methods, UV absorbance melting curves: Cary100,1-cm quartz cell,268nm, heating1.0°C/min and cooling0.5 or0.2°C/min. A platinum resistance probe monitored an adjacent solvent cell. Initial J. is retained exactly.
Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature by J. Marmur and P. Doty by
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Original article scan: J.Marmur and P.Doty, Journal of Molecular Biology5 (1962), pp.109–118. Printedp.110, section2, describes the Beckman DU spectrophotometer, heated quartz cuvettes,260nm absorbance and thermal-expansion correction; Fig.1 gives an experimental melting curve. Publisher record: www.sciencedirect.com/science/article/pii/S0022283662800667
Primary source: depts.washington.edu/bpsd/people/faculty/entry/gvarani/
Verified locator: Named faculty page, image alt text Gabriele Varani Profile Image and Research summary. Laboratory publication list depts.washington.edu/varani2/?page_id=14 explicitly lists G. Varani, C. Cheong and I. Tinoco Jr., Structure of an Unusually Stable RNA Hairpin, Biochemistry30,3280–3289(1991). Direct named portrait URL linked by profile: depts.washington.edu/bpsd/wordpress/wp-content/uploads/2024/10/varani_gabriele.jpg .
Biochemistry30(13),3280–3289(1991), DOI10.1021/bi00227a016; indexed byline G. Varani, C. Cheong and I. Tinoco Jr. Abstract: NMR interproton distances/scalar couplings, constrained structural model and unusual loop contacts. Full Gabriele Varani byline also appears in the companion Nature346,680–682(1990), DOI10.1038/346680a0, www.nature.com/articles/346680a0 .
Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops by H. A. Heus and others by
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Primary archive documentation, Introduction to Electron Density Maps: coordinates versus experimental structure factors, observed/calculated map coefficients, difference maps, poorly resolved regions and validation. Coefficient files contain weighted amplitudes and phases.
Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops" by Carl R. Woese and others by
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PNAS87(21),8467–8471(1990), DOI10.1073/pnas.87.21.8467. Indexed byline C. R. Woese, S. Winker and R. R. Gutell. Original Abstract identifies GNRA, UNCG and rarer CUUG loop motifs, and closing-base-pair preferences. Original article also indexed at materiais.dbio.uevora.pt/Micro/Woese.pdf ; primary archive pmc.ncbi.nlm.nih.gov/articles/PMC54977/ .
Thermodynamic characterization of naturally occurring RNA tetraloops by Justin P. Sheehy and others by
Codex 0 2026-11-05
RNA16(2),417–429(2010), DOI10.1261/rna.1773110. Primary byline Justin P. Sheehy, Amber R. Davis and Brent M. Znosko; Department of Chemistry, Saint Louis University. Abstract: optical melting of24 common-tetraloop stem-loop sequences and determination of thermodynamic parameters and melting temperatures. Full-text Materials and Methods describes absorbance-versus-temperature curves. Primary archive pmc.ncbi.nlm.nih.gov/articles/PMC2811670/ .
Verified locator: Primary MRC-hosted CV: PDFpage1 names Andrew Philip Carter; PDFpage9, publication54 reproduces the2001 Science291,498–501 paper by Carter AP et al. This directly establishes the initial-only target identity. Companion first-person biography www2.mrc-lmb.cam.ac.uk/groups/cartera/andrew-carter-biography/ Summary explicitly describes IF1–ribosome structure work. Named portrait linked from www2.mrc-lmb.cam.ac.uk/groups/cartera/people/ ; image cache miss. No dates or career claims inferred from initials.
Primary structural-deposition record PDB1CLL: X-ray diffraction, 1.70 angstrom resolution. Experimental Data Snapshot and Primary Citation abstract report four modeled calcium ions and two EF-hand loops per lobe of the resolved calmodulin. Deposition authors and the original 1992 paper are supplied by the record; this card is for the deposited dataset.
Primary curated conserved-domain record cd00213: S-100 family alignment and conserved calcium-binding/dimerization features. Distinguishes the S100-specific N-terminal EF hand from the C-terminal canonical EF hand; structural evidence includes calcium-bound human S100A8 PDB1MR8. Family membership does not imply identical ligand occupancy or a single shared biological activity.
Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation by Tanweer Hussain and others by
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Cell167(1),133–144.e13(2016), DOI10.1016/j.cell.2016.08.074; PMID27662086 pubmed.ncbi.nlm.nih.gov/27662086/ . Primary byline Tanweer Hussain verified. Highlights, Introduction and Results: eleven Thermus thermophilus 30S preinitiation reconstructions, resolutions as high as3.6angstrom; IF1 anchoring, IF2 positioning of initiator-tRNA formylmethionine and IF3 conformational changes accompanying P-site accommodation. Structural classes support a proposed pathway, not a real-time movie of each particle. Indexed full-text read used when direct PMC reader returned a browser challenge.
Crystal structure of an initiation factor bound to the 30S ribosomal subunit by A. P. Carter and others by
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Science291(5503),498–501(2001), DOI10.1126/science.1057766. Primary indexed abstract and initial-only first-author byline A.P.Carter verified. IF1–30S X-ray structure: A-site occlusion, displacement of 16S-rRNA bases A1492/A1493 and long-range subunit conformational changes. Associated PDB1HR0. No fuller identity inferred from the initials.
Primary source: biology.mit.edu/profile/uttam-rajbhandary/
Real-time assembly landscape of bacterial 30S translation initiation complex by Pohl Milón and others by
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Nature Structural & Molecular Biology19,609–615(2012), DOI10.1038/nsmb.2285. First-author primary byline Pohl Milón verified. Official institute manuscript pure.mpg.de/rest/items/item_1477639/component/file_1477642/content . Abstract and Figures2–4,6–7: kinetically favored IF2/IF3 recruitment followed by IF1 stabilization; mRNA can join at different times. Model rate example in the concept article is independently stipulated, not fitted experimental constants.
Primary first-person research recollection by Joe M. McCord, dated24March1981 and published Citation Classics27April1981. Page1 explains xanthine-oxidase/cytochrome-c experiments, free-solution superoxide, contaminating dismutase in protein preparations and the1969 isolation/assay paper (JBC244,6049–6055). Full name printed in the commentary; no birth date inferred. Original1969 publisher PDF returned403, so historical description is explicitly based on this researcher account.
Structure and mechanism of Mycobacterium smegmatis polynucleotide phosphorylase by Mihaela-Carmen Unciuleac and others by
Codex 0 2026-11-05
RNA27(8),959–969(2021), DOI10.1261/rna.078822.121; PMID34088850. Primary byline verifies co-first authors Mihaela-Carmen Unciuleac and Shreya Ghosh. Abstract and cryo-EM Results identify a ring-shaped trimer, terminal RNA in an active site and an adenine base in the central tunnel. Figure4 distinguishes observed RNA/metals from an imported comparison phosphate. No complete RNA transit trajectory inferred from a static density map.
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 2. You can publish local OurBigBook lightweight markup files to either OurBigBook.com or as a static website.Figure 3. Visual Studio Code extension installation.Figure 5. . You can also edit articles on the Web editor without installing anything locally. Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension. - Infinitely deep tables of contents:
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