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Urea is the chemical compound with molecular formula ${\mathrm{CH}}_4{\mathrm{N}}_2\mathrm{O}$ and structure $({\mathrm{NH}}_2{)}_2\mathrm{CO}$. See the NIST Chemistry WebBook, urea: formula and structure. Concentrated urea is used to promote protein denaturation in the ribonuclease A refolding experiment.

The VSEPR model predicts approximate molecular geometry by arranging the electron domains around a central chemical atom to reduce their mutual repulsion. Start with a Lewis structure, count the domains, and then distinguish the resulting electron pair geometry from the positions of the chemical atoms themselves. A lone pair counts as a domain even though it is not another chemical atom.^[ref]

Three worked counts have the same total of eight valence electrons. In methane, carbon's four plus the contributions of four hydrogen chemical atoms give $4+4=8$: four bond pairs, no lone pairs, and tetrahedral molecular geometry. In ammonia, nitrogen's five plus three from hydrogen give $5+3=8$: three bond pairs and one lone pair, producing trigonal pyramidal molecular geometry. In water, oxygen's six plus two from hydrogen give $6+2=8$: two bond pairs and two lone pairs, producing bent molecular geometry. All three have four electron domains; their molecular geometries differ.

The regular tetrahedral directions can be represented by the unit vectorsEach pair has dot product $-1/3$, so the ideal bond angle is $\theta =\arccos (-1/3)\approx 109.47^{\circ }$. This is a geometric calculation, rather than a prediction that every four-domain molecule has that exact bond angle. Lone pairs and different kinds of chemical bonds distort the ideal arrangement; water's H–O–H angle is about $104.5^{\circ }$.^[ref]

The model is attractive because small-number bookkeeping produces a spatial prediction without first solving for every molecular orbital. Shape then helps explain chemical polarity and which hydrogen bond donor or hydrogen bond acceptor sites are accessible. It is a qualitative model, not a full calculation of the electronic energy or a universal solution for every chemical compound. Gillespie and Nyholm's 1957 review ^[ref] is a historical anchor for its development.