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To pool factor levels in a normal linear model, impose equality of their fitted means while retaining any needed interaction terms. Compare the resulting nested model with the full model using a nested-model F-test. For two cells each of size $m$, pooling their fitted means adds $(m/2)({\overline{Y}}_1-{\overline{Y}}_2{)}^2$ to the residual sum of squares. If pooling two pairs separately within two other-factor levels, there are four restrictions.

A regression factor is a categorical predictor represented by level indicators and contrasts. Treating year as a regression factor permits arbitrary differences between the three yearly means, reflecting conditions such as weather, rather than imposing a linear time trend.

Let $Y_{ijk}$ be the yield for seed variety $i\in \{1,2\}$, fertiliser level $j\in \{L,H\}$, and year $k\in \{2004,2005,2006\}$. A treatment-coded two-factor normal linear model with additive year effects iswith independent $N(0,{\sigma }^2)$ errors. The unrestricted coefficients are ${\beta }_0,a,b,c_{2005},c_{2006},d$: six parameters for twelve observations. Equivalently use baseline-zero variety, fertiliser, and interaction arrays. There are no year-treatment interactions in this fit.

Dividing each sum of squares by its statistical degrees of freedom gives the completed analysis of variance:In particular, the missing interaction statistic is $16.0083/(2.8414/6)\simeq 33.803$. Its null hypothesis is $H_0:d=0$, against $H_1:d\ne 0$: the change in mean yield from high fertiliser is the same for both varieties. Under the null hypothesis and the independent homoscedastic normal linear model, this nested-model F-test has distribution $F_{1,6}$. The printed $p$-value 0.001137 strongly rejects no interaction.

Do not drop fertiliser just because its main-effect ANOVA row has $p=0.7011$. In this balanced factorial design that row measures a fertiliser effect averaged over varieties; large opposite effects can cancel. The strongly supported interaction requires retaining its associated main effects by regression model hierarchy. Seed and year also have evidence of effects in their ANOVA rows, so this table alone gives no compelling simplification of the fitted terms.

The interaction contrast is $-4.6200$, with standard error 0.7946. The fitted high-minus-low fertiliser effect is $+2.4700$ for variety 1 but $2.4700-4.6200=-2.1500$ for variety 2. The fitted variety-2-minus-variety-1 contrast is $+3.6500$ under low fertiliser and $3.6500-4.6200=-0.9700$ under high fertiliser. Thus variety 2 performs best under low fertiliser, while high fertiliser benefits variety 1 and reduces variety 2's fitted yield. The marginal fertiliser effect is only $(2.4700-2.1500)/2=0.1600$.

The four fitted means in the baseline year are $5.5050,7.9750,9.1550,7.0050$ for $(1,L),(1,H),(2,L),(2,H)$ respectively. Add $1.5775$ in 2005 and $0.0875$ in 2006 to every fitted mean. The 2005 coefficient has $p=0.017646$ under a $t_6$ test of a zero contrast with 2004; the analogous 2006 contrast has $p=0.863216$. The latter is lack of evidence for a difference, not proof that the yearly means coincide. Standard errors for the combined contrasts require the coefficient covariance matrix. The experiment is small: residual standard error is 0.6882 on only six statistical degrees of freedom. If the same fields were reused, possible within-field dependence and field allocation would need checking before treating the fitted error independence as established.

Test $H_0:{\gamma }_d=0$ for both nonreference days, against at least one nonzero day fixed effect, conditional on chocolate. There are two added regression coefficients and $24-6=18$ residual statistical degrees of freedom. The nested-model F-test statistic isUnder $H_0$ and the normal linear model assumptions, $F\sim F_{2,18}$. Its 5% upper critical value is $3.555$, so do not reject the absence of day effects; the p-value is approximately $0.456$. Thus the missing row has two statistical degrees of freedom, mean square $4.875$, and the F-test value above. These observations do not provide evidence that including day improves the chocolate-adjusted mean model. They do not prove that every possible day effect or chocolate–day interaction term is absent.

The ordinary least squares objective has gradient $2X^{T}X\beta -2X^{T}Y$. The normal equation therefore givesThe Gram matrix $X^{T}X$ is a positive-definite matrix because $X$ has full column rank. More explicitly, for any $b$,since $X^T(Y-X\hat{\beta })=0$. This proves that the displayed solution is the unique global minimum.

The fitted values are $\hat{Y}=X\hat{\beta }=HY$, where the hat matrix isThe inverse of the symmetric matrix $X^{T}X$ is symmetric, so $H^T=H$. Multiplication gives $H^2=X(X^{T}X{)}^{-1}(X^{T}X)(X^{T}X{)}^{-1}{X}^T=H$. Thus $H$ is the orthogonal projection onto the column space of the design matrix.

The regression residual vector is $e=Y-\hat{Y}=GY$ with $G=I_n-H$. Consequently $G^T=G$, $G^2=I_n-2H+H^2=G$, and the residual sum of squares isBy fitted-residual orthogonality, $GH=0$. Using $\mathrm{Cov}(Y)={\sigma }^2{I}_n$, the cross-covariance matrix isBoth vectors are jointly normal, so they are also independent by independence of uncorrelated jointly normal variables. The zero covariance calculation itself only needs the common error variance and lack of error correlations.

For the first wind fit, let $v_i$ be wind velocity and $Y_i$ electrical output. The simple linear regression is $Y_i=\alpha +\beta v_i+{\epsilon }_i$, with independent ${\epsilon }_i\sim N(0,{\sigma }^2)$. It has two fitted mean parameters and $25-2=23$ residual degrees of freedom. The missing analysis of variance entries are therefore velocity degrees of freedom $1$, velocity mean square $8.9296$, and residual degrees of freedom $23$. The residual mean square is $1.2816/23\simeq 0.05572$, and $8.9296/(1.2816/23)\simeq 160.25$, consistent with the printed value after rounding.

Because the model includes a regression intercept, the coefficient of determination is the explained sum of squares divided by the total centered sum of squares:A large coefficient of determination does not rule out a wrong mean function. In the PDF's first residual-versus-fitted plot, residuals are negative at both ends and positive in the middle. This curved pattern agrees with the visibly flattening output-versus-velocity relationship and motivates a polynomial regression with a quadratic term.

The second wind model is $Y_i=\alpha +{\beta }_1{v}_i+{\beta }_2{v}_i^2+{\epsilon }_i$, again with independent common-variance normal errors. Its fitted mean is $-1.155898+0.722936v_i-0.038121v_i^2$. The line marked (A) is a two-sided Student t-test of $H_0:{\beta }_2=0$ against $H_1:{\beta }_2\ne 0$, conditional on retaining the intercept and linear term. Under the null hypothesis,Its two-sided p-value is $6.59\times 10^{-8}$. This is far below $0.05$, so reject a purely linear mean in favour of the quadratic fit. Equivalently, the extra-term nested-model F-test has $F=t^2\simeq 63.15$ and null law $F_{1,22}$.

The third fit is a reciprocal-predictor regression, $Y_i=a+b/v_i+{\epsilon }_i$, with estimated mean $2.9789-6.9345/v_i$. It has two mean parameters rather than the quadratic model's three. Its residual standard error is smaller, $0.09417$ versus $0.1227$, and its coefficient of determination is larger, $0.9800$ versus $0.9676$. The corresponding residual sums of squares are approximately $23(0.09417{)}^2=0.20396$ and $22(0.1227{)}^2=0.33122$. The reciprocal fit is preferable on both these fit measures and parsimony. The two models are not nested, so an ordinary extra-term F-test between them is inappropriate. On the common normal-error likelihood, the difference ${\mathrm{AIC}}_3-{\mathrm{AIC}}_2=25\log (0.20396/0.33122)-2\simeq -14.12$ also favours the third model.

Neither lower residual sum of squares nor a higher coefficient of determination establishes adequate assumptions. The quadratic residual-versus-fitted plot removes the original pronounced curvature; the reciprocal plot also has no comparably obvious mean trend. The low-output residuals appear somewhat more spread out, so check scale-location plots and residuals against velocity for heteroscedasticity. Q-Q plots assess normality; residuals against observation order assess serial dependence; regression leverage and Cook's distance identify influential observations. Further cross-validation, replicate observations at comparable velocities, and prediction errors would help choose between their extrapolation behaviours. Both fitted shapes should be judged principally over the observed positive-velocity range.

Let $W_{aj\ell }$ be recall for age level $a$, processing level $j$, and replicate $\ell =1,\dots ,10$. Write $u_a=1$ for Younger and $0$ for Older. With Older and A as the reference levels in a regression factor, the additive two-factor normal linear model under treatment coding iswhere the errors are independent $N(0,{\sigma }^2)$, with common positive variance. The design matrix is fixed; subjects supply independent observations; the specified conditional mean is correct; and the absence of an interaction term means the age difference is constant across processing levels. These are model assumptions, not consequences of random assignment. The treatment allocation supports independence between processing assignment and background characteristics, but age itself was not randomized.

An older subject in A has $u_a=0$ and ${\gamma }_A=0$, so the estimated mean is $11.35$ words. Its standard error is the intercept's $0.7632$. There are $100-6=94$ residual degrees of freedom, giving the 95% confidence interval for this mean:This is a mean-response confidence interval, not a prediction interval for a new individual's recall; the latter also includes the new observation's error variance.

The second two-factor normal linear model adds age-by-processing interaction terms:Its ten free mean parameters are equivalent to one mean for each of the ten cells. To compare the fits, the null hypothesis is ${\delta }_B={\delta }_C={\delta }_D={\delta }_E=0$. The full residual sum of squares is $722.30$ on $90$ degrees of freedom. Adding interaction reduces the additive model's residual sum of squares by $190.30$, so the reduced value is $912.60$. The nested-model F-test statistic isIts p-value is $0.0002793$. Reject additivity and retain the interaction model. The significant interaction means that a single age effect averaged over all processing methods does not adequately summarize the data.

The regression intercept $11.0$ is the older-A mean. The age coefficient $3.8$ is the younger-minus-older contrast specifically in A. The processing coefficients $(-4.0,2.4,1.0,-4.1)$ compare B, C, D and E with A specifically among older subjects. The interaction coefficients $(-4.3,0.4,3.5,-3.1)$ are differences between the age contrast in each of those methods and its value in A. Adding the relevant coefficients givesThus A, C and especially D favour younger subjects in their estimated means, whereas B and E have little estimated age difference. In the younger group, D has the largest estimated recall, followed by C and A; B and E are much lower. Among older subjects C is largest, D and A are intermediate, and B and E are lowest. Comparing these orders is a description of estimates, not a claim that every pairwise difference is significant.

Each coefficient's printed standard error estimates its uncertainty; its $t$ statistic divides the estimate by that error, and its two-sided p-value uses $t_{90}$ under the relevant zero-contrast null hypothesis. For example, the older B-versus-A and E-versus-A contrasts have $p=0.00217$ and $0.00170$. The C-versus-A and D-versus-A older contrasts have $p=0.06139$ and $0.43201$. The B interaction has $p=0.01846$, while the D interaction is borderline at $0.05387$ and the other two individual interaction tests are not significant at $5\%$. These individual tests do not override the joint interaction F-test, and multiple comparisons require care. A simple younger-versus-older contrast outside A combines coefficients and must use their estimated covariance, rather than adding their marginal errors.

The residual standard error $2.833$ estimates $\sigma$. The coefficient of determination $0.7293$ is the fraction of centered sample recall variation explained by the ten-cell model. The overall $F=26.93$ with null law $F_{9,90}$ tests all nine non-intercept coefficients jointly against zero, giving extremely strong evidence that the cell means are not all equal. The sequential analysis of variance separates age, process, and their interaction; the balanced design makes the main-effect sums orthogonal, whereas the coefficient table uses the specified reference-level contrasts.

To assess pooling into three processing types, retain age-by-type interaction because the previous test rejects additivity. The reduced model $W\sim \mathrm{Age}\ast \mathrm{Type}$ has six cell means. Its null hypothesis says A and C have equal means within each age, and B and E have equal means within each age: four restrictions. Compare it with the ten-cell model usingIn fact the supplied fitted cell means and equal cell sizes determine the increase without raw observations. Pooling two ten-person cells with means $m_1,m_2$ adds $5(m_1-m_2{)}^2$ to the residual sum of squares. Here the four differences are $2.4,2.8,-0.1,1.1$, soTherefore $F_{\mathrm{pool}}=2.3083$ and $p\simeq 0.0640$. At $5\%$, the data do not reject the three-type reduction, though the result is borderline and is not proof that the pooled means are identical. This factor-level pooling test keeps the previously supported interaction structure; reducing the categories and removing all interaction simultaneously would test a different set of restrictions.

In the larger normal linear model, add laboratory intercept offsets ${\gamma }_B{I}_{Bi}+{\gamma }_C{I}_{Ci}$ to the mean in part (a). The nested-model F-test comparesThe smaller and larger models fit four and six mean coefficients respectively. Under $H_0$, independent Gaussian errors with common variance give independent quantities $({\mathrm{RSS}}_1-{\mathrm{RSS}}_2)/{\sigma }^2\sim {\chi }_2^2$ and ${\mathrm{RSS}}_2/{\sigma }^2\sim {\chi }_{24}^2$. Thus the test statistic isThe p-value is the upper-tail probability $\mathrm{Pr}(F_{2,24}\ge 1.9253)=0.1677$. At the conventional 5% significance level, do not reject the common-intercept restriction. Prefer the simpler model tumour1 on this comparison. This does not prove the intercepts coincide, nor address the curvature identified in part (b); the exact F-test calibration assumes the underlying error and mean assumptions. The one-decimal RSS values give $818.7$ when subtracted, whereas the table's difference uses unrounded values.

The comparison is a nested-model F-test of the three time-by-diet interaction coefficients, with null hypothesis that all are zero. The reduced linear regression model has a common time slope and four diet-specific intercepts; the full model permits four slopes. It has eight fitted coefficients and $579-8=571$ residual degrees of freedom.The rounded sums of squares give the displayed approximation; the software reports $F=16.824$ using unrounded values. The quoted p-value $1.744\times 10^{-10}$ gives overwhelming evidence against equal log-weight growth slopes across diets under the normal linear model assumptions. Thus reject the common-slope hypothesis. Because repeated measurements on the same chicken may be correlated, the exact reference distribution requires independent, homoscedastic Gaussian errors; the displayed ordinary regression output by itself does not establish that assumption.

The command performs a nested-model F-test for $H_0:{\beta }_1=0$ against $H_1:{\beta }_1\ne 0$, retaining the intercept and $x_2$ coefficient in both models. Write $RS{S}_2$ and $RS{S}_3$ for the residual sum of squares in the reduced and full fits. Under $H_0$ and the independent normal-error assumptions,By Cochran's theorem, the numerator and denominator are independent scaled chi-squares with one and $n-3$ degrees of freedom. Equivalently, for this single-coefficient restriction, $F=t_{{\beta }_1}^2$, so its p-value equals that of the two-sided coefficient Student's t-test in model3.

Using the printed $t$ value gives $F=0.800^2=0.640$ and $p\approx 0.43$. The printed estimate and standard error instead giveThis discrepancy is present in the PDF and is too large to be explained by rounding at the shown precision; the underlying ANOVA output is omitted, so an exact unique statistic cannot be recovered. The univariate correlation and $t$ value imply $n\approx 2+2.575^2(1-0.2517297^2)/0.2517297^2\approx 100.006$, consistent with $n=100$ after rounding. With denominator degrees of freedom 97, the two versions give p-values approximately $0.4257$ and $0.4298$, respectively. Either way the partial effect is not significant at 5%.

Let $RS{S}_0$ and $RS{S}_1$ be the residual sums of squares under the restricted model with $p_0$ coefficients and the full model with $p$ coefficients. Assuming $X$ has full column rank, the nested-model F-test usesUnder the null hypothesis this has the $F_{p-p_0,n-p}$ distribution.

Maximizing the Gaussian likelihood over $\beta$ and the unknown variance gives ${\hat{\sigma }}^2=RSS/n$. Thus the likelihood-ratio test statistic isSincewe obtainThe logarithm is strictly increasing, so the two test statistics give exactly the same rejection ordering.

Treat make as a categorical predictor, converting it to a factor explicitly if necessary:

The models are nested. The first nested-model F-test compares fit2 with the intercept-only fit1. Adding the five quantitative predictors reduces the residual sum of squares from $8584.0$ to $3349.1$, withThere is overwhelming evidence that these quantitative car properties jointly improve the model.

The second test compares fit3 with fit2. Adding make reduces the residual sum of squares further to $840.8$, withThus manufacturer has a highly significant effect even after adjusting for the five quantitative properties, and fit3 is preferred among these nested models.

There are $93$ observations because the intercept-only model has $92=93-1$ residual degrees of freedom. The make term uses $31$ additional degrees of freedom. By the degrees of freedom of a factor predictor, a factor with $m$ represented levels contributes $m-1$ degrees of freedom when an intercept is present. Henceunique manufacturers occur in the dataset.

Treatment coding sets one reference level in a regression factor to zero and represents each other level by an indicator column. With two interacting factors, a main-effect coefficient compares levels at the other factor's reference level; an interaction coefficient is a difference of these contrasts. A joint nested-model F-test can be significant even when some individual coefficient tests are not.