Past exam of the biological physics course of the University of Oxford / 2019 / 2 / b / Solution

Panel B steps the membrane from approximately $-80$ to $-40\mathrm{mV}$ and holds it there. The sodium current becomes inward, peaks rapidly, and decays almost to zero despite maintained depolarization. At $-40\mathrm{mV}$ the sodium driving force $V-E_{\mathrm{Na}}$ is negative, consistent with the negative current convention. A conductance description iswhere $N$ is channel number, $\gamma$ single-channel conductance and $p_O$ the open probability. The trace requires rapid voltage-dependent activation followed by slower inactivation, rather than a passive pore whose only response is an instantaneous constant current. Recovery normally requires repolarization, helping produce a refractory period and directional propagation of excitation.

A typical eukaryotic voltage-gated sodium channel contains four homologous membrane-spanning domains in one large pore-forming protein. Charged S4 helices sense voltage; pore-associated regions form a selective pathway and activation gate. Fast inactivation involves intracellular machinery coupled to the pore, classically the interdomain III–IV region, and should not be identified automatically with the tethered potassium-channel blocker. The pore permits rapid downhill electrochemical transport while maintaining selectivity against other ions.

Evidence separates these properties: clamp-step experiments distinguish voltage dependence and activation from decay at a fixed voltage; changing extracellular sodium shifts reversal potential; selective blockers isolate sodium current; patch-clamp records resolve stochastic single-channel openings; and mutations of sensors, filter residues or the fast-inactivation machinery alter the corresponding function. A single macroscopic trace alone cannot uniquely determine all microscopic rate constants.