Stefan flow refers to a type of fluid flow that occurs under the influence of a temperature gradient, particularly in non-Newtonian fluids or when phase changes are involved, such as melting or solidification. The term is often associated with the Stefan problem, which was formulated to describe the heat transfer associated with phase changes, such as the melting of ice or the solidification of metals. In the context of the Stefan problem, the Stefan flow describes how the interface between two phases (e.g.
Relativistic heat conduction refers to the study of heat transfer processes within the framework of relativity, specifically special relativity. In classical thermodynamics and heat conduction, the assumptions made generally rely on non-relativistic speeds and classical physics principles. However, when considering systems that may involve significant fractions of the speed of light or strong gravitational fields, these classical assumptions break down.
The sieving coefficient, often used in the context of kidney function and renal physiology, refers to a measure that indicates how selectively a substance can be filtered through the kidney's glomerulus. It quantitatively assesses the permeability of the glomerular membrane to various solutes, helping to determine how well certain substances can pass from the blood into the urine.
Turbulence refers to the chaotic, irregular motion of fluid (gases or liquids) that is characterized by vortices, eddies, and rapid changes in pressure and velocity. It contrasts with laminar flow, where fluid moves in smooth, orderly layers. In different contexts, turbulence can be described as follows: 1. **Physics and Fluid Dynamics**: In fluid mechanics, turbulence is seen when the Reynolds number—a dimensionless quantity that predicts flow patterns in different fluid flow situations—is high.
Termite refers to a type of social insect belonging to the order Blattodea, which also includes cockroaches. Termites are primarily known for their role in breaking down cellulose, a complex carbohydrate found in wood, plants, and other organic matter. They are often found in colonies and can vary in size, with some colonies containing millions of individuals. Termites play a significant ecological role by recycling nutrients and contributing to soil health.
Valentin Turchin was a prominent Soviet and American computer scientist, known for his work in artificial intelligence, cybernetics, and the philosophy of science. Born on March 15, 1931, Turchin made significant contributions to the field, particularly through his development of the concept of "self-organization" in complex systems. He also worked on the formalization of the idea of "intelligence" within machines and explored the implications of computing and intelligence in society.
The Hierarchical Network Model is a framework used in various fields, including computer networking, organizational theory, and information systems, to represent and understand the structure and behavior of complex systems. While the specific applications may vary, the core concept is generally centered around organizing elements into a hierarchy of levels, where each level has a distinct function, role, or characteristic.
Social Network Analysis (SNA) in criminology is a methodological approach that examines the relationships and interactions among individuals, groups, or organizations within a social network, particularly in the context of criminal behavior and illicit activities. By analyzing these connections, criminologists can gain insights into how crime occurs, how criminal networks operate, and the social dynamics that facilitate or inhibit criminal activity.
Social network analysis (SNA) software is a type of analytical tool used to study and visualize social networks by mapping and analyzing relationships and interactions between various nodes (which can represent people, organizations, or other entities). The software helps researchers, analysts, and organizations understand the structure and dynamics of social networks, identify key players, and assess the strength and quality of relationships.
Maybe the most famous one is Mycoplasma genitalium byt there are others, and notably with lower biosafety levels:
www.lgcstandards-atcc.org/products/all/49896.aspx:
- £355.00 in 2019
- biosafety level: 2
Reproduction time: www.quora.com/unanswered/How-long-do-Mycoplasma-bacteria-take-to-reproduce-under-optimal-conditions
Has one of the smallest genomes known, and JCVI made a minimized strain with 473 genes: JCVI-syn3.0.
The reason why genitalium has such a small genome is that parasites tend to have smaller DNAs. So it must be highlighted that genitalium can only survive in highly enriched environments, it can't even make its own amino acids, which it normally obtains fromthe host cells! And because it cannot do cellular respiration, it very likely replicates slower than say E. Coli. It's easy to be small in such scenarios!
Power, Sex, Suicide by Nick Lane (2006) section "How to lose the cell wall without dying" page 184 has some related mentions puts it well very:
One group, the Mycoplasma, comprises mostly parasites, many of which live inside other cells. Mycoplasma cells are tiny, with very small genomes. M. genitalium, discovered in 1981, has the smallest known genome of any bacterial cell, encoding fewer than genes. Despite its simplicity, it ranks among the most common of sexually transmitted diseases, producing symptoms similar to Chlamydia infection. It is so small (less than a third of a micron in diameter, or an order of magnitude smaller than most bacteria) that it must normally be viewed under the electron microscope; and difficulties culturing it meant its significance was not appreciated until the important advances in gene sequencing in the early 1990s. Like Rickettsia, Mycoplasma have lost virtually all the genes required for making nucleotides, amino acids, and so forth. Unlike Rickettsia, however, Mycoplasma have also lost all the genes for oxygen respiration, or indeed any other form of membrane respiration: they have no cytochromes, and so must rely on fermentation for energy.
Downsides mentioned at youtu.be/PSDd3oHj548?t=293:
- too small to see on light microscope
- difficult to genetically manipulate. TODO why?
- less literature than E. Coli.
Data:
- www.ncbi.nlm.nih.gov/bioproject/97 contains genome, genes, proteins.
- www.genome.jp/kegg-bin/show_pathway?mge01100 all known pathways. TODO: numerical reaction coefficients? Which enzyimes mediate what? Appears to factor pathways across organisms, which is awesome.
GPU accelerated, simulates the Craig's minimized M. genitalium, JCVI-syn3A at a particle basis of some kind.
Lab head is the cutest-looking lady ever: chemistry.illinois.edu/zan, Zaida (Zan) Luthey-Schulten.
- 2022 paper: www.cell.com/cell/fulltext/S0092-8674(21)01488-4 Fundamental behaviors emerge from simulations of a living minimal cell by Thornburg et al. (2022) published on Cell
- faculty.scs.illinois.edu/schulten/lm/ actual source code. No Version control and non-code drop release, openess and best practices haven't reached such far obscure reaches of academia yet. One day.
- blogs.nvidia.com/blog/2022/01/20/living-cell-simulation/ Nvidia announcement. That's how they do business, it is quite interesting how they highlight this kind of research.
www.wholecellviz.org/viz.php awesome visualization of simtk, paper: www.ncbi.nlm.nih.gov/pmc/articles/PMC3413483/ A Whole-Cell Computational Model Predicts Phenotype from Genotype - 2013 - Jonathan R. Karr.
Followed up by the E. Coli Whole Cell Model by Covert Lab.
Nicolas Gisin is a prominent physicist known for his contributions to the field of quantum mechanics, particularly in quantum information theory and quantum optics. He worked at the University of Geneva, where he has conducted research on various aspects of quantum theory, including quantum entanglement and quantum cryptography. Gisin is often recognized for his work on the foundations of quantum mechanics and has published numerous papers on quantum communication and quantum teleportation.
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 3. Visual Studio Code extension installation.Figure 4. Visual Studio Code extension tree navigation.Figure 5. Web editor. You can also edit articles on the Web editor without installing anything locally.Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.Video 4. OurBigBook Visual Studio Code extension editing and navigation demo. Source. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





