G protein-coupled receptors (GPCRs) are a large family of membrane proteins that play a critical role in cellular signaling. These receptors are characterized by their ability to pass through the cell membrane seven times (hence they are also known as seven-transmembrane receptors). GPCRs respond to a variety of external signals, including hormones, neurotransmitters, and environmental stimuli, and are involved in many physiological processes.
Gel electrophoresis of proteins is a laboratory technique used to separate and analyze proteins based on their size, charge, and other physical properties. It involves the movement of charged molecules through a gel matrix under the influence of an electric field. Here are the key components and steps involved in the process: ### Key Components: 1. **Gel Matrix**: Typically made from agarose or polyacrylamide, the gel serves as a medium through which proteins can migrate.
A genetically modified organism (GMO) is an organism—be it a plant, animal, or microorganism—that has been altered in a laboratory using biotechnology techniques, particularly genetic engineering. This process involves the manipulation of an organism’s genetic material (DNA) to achieve desired traits or characteristics.
Hox genes are a group of related genes that play a crucial role in the developmental processes of many organisms, including amphibians and reptiles. These genes are part of a larger family known as homeobox genes, which encode for proteins that function as transcription factors regulating the expression of other genes involved in development. ### Function of Hox Genes: 1. **Body Plan Organization:** Hox genes are responsible for the anterior-posterior (head-to-tail) patterning of the embryo.
HindIII is a type of restriction enzyme, which is a protein that cuts DNA at specific sequences. It is derived from the bacterium Haemophilus influenzae, and its recognition sequence is the palindromic DNA sequence 5'-AAGCTT-3'.
The histone octamer is a critical protein complex in the structure of eukaryotic chromatin, which is the material that makes up chromosomes. The octamer is formed by the association of eight histone proteins: two copies each of four core histones, which are H2A, H2B, H3, and H4. These histones are rich in positively charged amino acids, which helps them bind to the negatively charged DNA.
Host-cell reactivation (HCR) is a cellular mechanism that allows for the repair and recovery of damaged DNA within cells, particularly in response to DNA damage that occurs during the replication of viruses or following exposure to certain stressors, such as UV radiation or chemical agents. The basic tenet of host-cell reactivation involves the uptake of viral DNA that has been damaged and its subsequent repair by the host cell's repair machinery. It highlights the interplay between viral infections and host cellular processes.
Long interspersed nuclear elements (LINEs) are a type of non-LTR (long terminal repeat) retrotransposon found in the genomes of many eukaryotic organisms, including humans. They are a class of transposable elements that can copy and insert themselves into different locations in the genome, thereby contributing to genomic diversity and evolution.
In molecular biology, an inverted repeat refers to a specific sequence of nucleotides (the building blocks of DNA) that is repeated in reverse order. In other words, an inverted repeat consists of a sequence followed by the reverse complement of that same sequence.
Mating in yeast, particularly in the species Saccharomyces cerevisiae (commonly known as baker's or brewer's yeast), is a process by which two haploid yeast cells of opposite mating types (designated as "a" and "α" or "alpha") come together to form a diploid cell.
Initiation factors are proteins that play a crucial role in the initiation phase of translation, which is the process by which ribosomes synthesize proteins based on the information encoded in messenger RNA (mRNA). The initiation phase is the first step in translation, setting the stage for the assembly of the ribosome, the binding of mRNA, and the recruitment of transfer RNA (tRNA) carrying amino acids.
The International Nucleotide Sequence Database Collaboration (INSDC) is a partnership among three major nucleotide sequence databases: the GenBank database in the United States, the European Nucleotide Archive (ENA) in Europe, and the DNA Data Bank of Japan (DDBJ). The collaboration was established to ensure the comprehensive and global capture, maintenance, and accessibility of nucleotide sequence data.
An "interrupted gene" is a term typically used in genetics to refer to a gene that is split into segments by non-coding regions called introns. In eukaryotic organisms, genes are often composed of exons (the coding sequences that will be expressed as proteins) and introns (the non-coding sequences that are interspersed within the gene).
John M. Jumper is a prominent figure in the field of molecular biology, particularly known for his contributions to the study of protein structure and function. He is widely recognized for his work on protein folding and the development of computational methods to predict protein structures. His contributions have been influential in understanding the mechanisms of various biological processes and have paved the way for advancements in drug design and biotechnology.
Macromolecular assembly refers to the process by which large molecules, such as proteins, nucleic acids, or polysaccharides, come together to form higher-order structures. These assemblies are crucial for various biological functions and processes within living organisms.
Mitochondrial replacement therapy (MRT) is a reproductive technology designed to prevent the transmission of mitochondrial diseases from mother to child. Mitochondrial diseases are genetic disorders caused by mutations in the DNA of mitochondria, the energy-producing organelles in cells. These diseases can lead to a wide range of health issues, including muscular weakness, neurological problems, and organ dysfunction. MRT involves a process that replaces faulty mitochondria in a woman's eggs with healthy mitochondria from a donor.
A molecular lesion refers to a specific alteration or damage at the molecular level within a biological molecule, primarily DNA, RNA, or protein. These lesions can result from various factors including environmental stress, chemical exposure, radiation, and errors during genetic replication or repair processes. In DNA, molecular lesions can manifest as mutations (changes in nucleotide sequences), strand breaks, cross-links, or modifications to the bases (such as oxidative damage).
A phagemid is a type of hybrid vector used in molecular biology that combines elements of both plasmids and bacteriophages (phages). Phagemids are typically designed to make it easier to clone and express genes in bacterial systems, particularly in the context of recombinant DNA technology.
Multilocus sequence typing (MLST) is a molecular typing method used to characterize bacterial isolates or other microbial species by analyzing the sequences of multiple housekeeping genes. This technique helps in understanding the genetic diversity, population structure, and evolutionary relationships of microorganisms. ### Key Features of MLST: 1. **Housekeeping Genes**: MLST typically targets 5 to 7 conserved and universally distributed housekeeping genes.
Multiplex Ligation-Dependent Probe Amplification (MLPA) is a molecular biology technique used to detect and quantify specific DNA sequences. It allows for the simultaneous analysis of multiple targets within a single reaction, making it a powerful tool for genetic analysis, especially in the context of copy number variation (CNV) detection, such as deletions or duplications of genomic regions.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 2.
    You can publish local OurBigBook lightweight markup files to either https://OurBigBook.com or as a static website
    .
    Figure 3.
    Visual Studio Code extension installation
    .
    Figure 4.
    Visual Studio Code extension tree navigation
    .
    Figure 5.
    Web editor
    . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
    Video 4.
    OurBigBook Visual Studio Code extension editing and navigation demo
    . Source.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact