Sandbox AQ by Ciro Santilli 34 Updated +Created
www.zdnet.com/article/googles-quantum-focused-sandbox-division-is-being-spun-off/ Google's quantum-focused Sandbox division is being spun off (2022)
Google Photos by Ciro Santilli 34 Updated +Created
Google custom hardware by Ciro Santilli 34 Updated +Created
DeepMind by Ciro Santilli 34 Updated +Created
They seem to do some cool stuff.
They have also declined every one of Ciro Santilli's applications for software engineer jobs before any interview. Ciro always wondered what does it take to get an interview with them. Lilely a PhD? Oh well.
In the early days at least lots of gamedev experience was enough though: www.linkedin.com/in/charles-beattie-0695373/.
GitLab by Ciro Santilli 34 Updated +Created
GitLab was very important to Ciro because he wanted to base Booktree on it.
Gauge field by Ciro Santilli 34 Updated +Created
A random field you add to make something transform locally the way you want. See e.g.: Video "Deriving the qED Lagrangian by Dietterich Labs (2018)".
Fine structure constant by Ciro Santilli 34 Updated +Created
Bank by Ciro Santilli 34 Updated +Created
Elliptic-curve Diffie-Hellman by Ciro Santilli 34 Updated +Created
The algorithm is completely analogous to Diffie-Hellman key exchange in that you efficiently raise a number to a power times and send the result over while keeping as private key.
The only difference is that a different group is used: instead of using the cyclic group, we use the elliptic curve group of an elliptic curve over a finite field.
Video 1. Source. youtu.be/NF1pwjL9-DE?t=143 shows the continuous group well, but then fails to explain the discrete part.
Object hd by Ciro Santilli 34 Updated +Created
Running:
hd hello_world.o
gives:
00000000  7f 45 4c 46 02 01 01 00  00 00 00 00 00 00 00 00  |.ELF............|
00000010  01 00 3e 00 01 00 00 00  00 00 00 00 00 00 00 00  |..>.............|
00000020  00 00 00 00 00 00 00 00  40 00 00 00 00 00 00 00  |........@.......|
00000030  00 00 00 00 40 00 00 00  00 00 40 00 07 00 03 00  |....@.....@.....|
00000040  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
*
00000080  01 00 00 00 01 00 00 00  03 00 00 00 00 00 00 00  |................|
00000090  00 00 00 00 00 00 00 00  00 02 00 00 00 00 00 00  |................|
000000a0  0d 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
000000b0  04 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
000000c0  07 00 00 00 01 00 00 00  06 00 00 00 00 00 00 00  |................|
000000d0  00 00 00 00 00 00 00 00  10 02 00 00 00 00 00 00  |................|
000000e0  27 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |'...............|
000000f0  10 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000100  0d 00 00 00 03 00 00 00  00 00 00 00 00 00 00 00  |................|
00000110  00 00 00 00 00 00 00 00  40 02 00 00 00 00 00 00  |........@.......|
00000120  32 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |2...............|
00000130  01 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000140  17 00 00 00 02 00 00 00  00 00 00 00 00 00 00 00  |................|
00000150  00 00 00 00 00 00 00 00  80 02 00 00 00 00 00 00  |................|
00000160  a8 00 00 00 00 00 00 00  05 00 00 00 06 00 00 00  |................|
00000170  04 00 00 00 00 00 00 00  18 00 00 00 00 00 00 00  |................|
00000180  1f 00 00 00 03 00 00 00  00 00 00 00 00 00 00 00  |................|
00000190  00 00 00 00 00 00 00 00  30 03 00 00 00 00 00 00  |........0.......|
000001a0  34 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |4...............|
000001b0  01 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
000001c0  27 00 00 00 04 00 00 00  00 00 00 00 00 00 00 00  |'...............|
000001d0  00 00 00 00 00 00 00 00  70 03 00 00 00 00 00 00  |........p.......|
000001e0  18 00 00 00 00 00 00 00  04 00 00 00 02 00 00 00  |................|
000001f0  04 00 00 00 00 00 00 00  18 00 00 00 00 00 00 00  |................|
00000200  48 65 6c 6c 6f 20 77 6f  72 6c 64 21 0a 00 00 00  |Hello world!....|
00000210  b8 01 00 00 00 bf 01 00  00 00 48 be 00 00 00 00  |..........H.....|
00000220  00 00 00 00 ba 0d 00 00  00 0f 05 b8 3c 00 00 00  |............<...|
00000230  bf 00 00 00 00 0f 05 00  00 00 00 00 00 00 00 00  |................|
00000240  00 2e 64 61 74 61 00 2e  74 65 78 74 00 2e 73 68  |..data..text..sh|
00000250  73 74 72 74 61 62 00 2e  73 79 6d 74 61 62 00 2e  |strtab..symtab..|
00000260  73 74 72 74 61 62 00 2e  72 65 6c 61 2e 74 65 78  |strtab..rela.tex|
00000270  74 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |t...............|
00000280  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000290  00 00 00 00 00 00 00 00  01 00 00 00 04 00 f1 ff  |................|
000002a0  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
000002b0  00 00 00 00 03 00 01 00  00 00 00 00 00 00 00 00  |................|
000002c0  00 00 00 00 00 00 00 00  00 00 00 00 03 00 02 00  |................|
000002d0  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
000002e0  11 00 00 00 00 00 01 00  00 00 00 00 00 00 00 00  |................|
000002f0  00 00 00 00 00 00 00 00  1d 00 00 00 00 00 f1 ff  |................|
00000300  0d 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000310  2d 00 00 00 10 00 02 00  00 00 00 00 00 00 00 00  |-...............|
00000320  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000330  00 68 65 6c 6c 6f 5f 77  6f 72 6c 64 2e 61 73 6d  |.hello_world.asm|
00000340  00 68 65 6c 6c 6f 5f 77  6f 72 6c 64 00 68 65 6c  |.hello_world.hel|
00000350  6c 6f 5f 77 6f 72 6c 64  5f 6c 65 6e 00 5f 73 74  |lo_world_len._st|
00000360  61 72 74 00 00 00 00 00  00 00 00 00 00 00 00 00  |art.............|
00000370  0c 00 00 00 00 00 00 00  01 00 00 00 02 00 00 00  |................|
00000380  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000390
Section header table by Ciro Santilli 34 Updated +Created
Array of Elf64_Shdr structs.
Each entry contains metadata about a given section.
e_shoff of the ELF header gives the starting position, 0x40 here.
e_shentsize and e_shnum from the ELF header say that we have 7 entries, each 0x40 bytes long.
So the table takes bytes from 0x40 to 0x40 + 7 + 0x40 - 1 = 0x1FF.
Some section names are reserved for certain section types: www.sco.com/developers/gabi/2003-12-17/ch4.sheader.html#special_sections e.g. .text requires a SHT_PROGBITS type and SHF_ALLOC + SHF_EXECINSTR
Running:
readelf -S hello_world.o
outputs:
There are 7 section headers, starting at offset 0x40:

Section Headers:
  [Nr] Name              Type             Address           Offset
       Size              EntSize          Flags  Link  Info  Align
  [ 0]                   NULL             0000000000000000  00000000
       0000000000000000  0000000000000000           0     0     0
  [ 1] .data             PROGBITS         0000000000000000  00000200
       000000000000000d  0000000000000000  WA       0     0     4
  [ 2] .text             PROGBITS         0000000000000000  00000210
       0000000000000027  0000000000000000  AX       0     0     16
  [ 3] .shstrtab         STRTAB           0000000000000000  00000240
       0000000000000032  0000000000000000           0     0     1
  [ 4] .symtab           SYMTAB           0000000000000000  00000280
       00000000000000a8  0000000000000018           5     6     4
  [ 5] .strtab           STRTAB           0000000000000000  00000330
       0000000000000034  0000000000000000           0     0     1
  [ 6] .rela.text        RELA             0000000000000000  00000370
       0000000000000018  0000000000000018           4     2     4
Key to Flags:
  W (write), A (alloc), X (execute), M (merge), S (strings), l (large)
  I (info), L (link order), G (group), T (TLS), E (exclude), x (unknown)
  O (extra OS processing required) o (OS specific), p (processor specific)
The struct represented by each entry is:
typedef struct {
    Elf64_Word  sh_name;
    Elf64_Word  sh_type;
    Elf64_Xword sh_flags;
    Elf64_Addr  sh_addr;
    Elf64_Off   sh_offset;
    Elf64_Xword sh_size;
    Elf64_Word  sh_link;
    Elf64_Word  sh_info;
    Elf64_Xword sh_addralign;
    Elf64_Xword sh_entsize;
} Elf64_Shdr;
Elementary charge by Ciro Santilli 34 Updated +Created
E. Coli Whole Cell Model by Covert Lab by Ciro Santilli 34 Updated +Created
github.com/CovertLab/WholeCellEcoliRelease is a whole cell simulation model created by Covert Lab and other collaborators.
The project is written in Python, hurray! But according to te README, it seems to be the use a code drop model with on-request access to master, very meh, asked rationale on GitHub discussion, and they confirmed as expected that it is to:
  • to prevent their publication ideas from being stolen. Who would steal publication ideas with public proof in an issue tracker without crediting original authors?
  • to prevent noise from non collaborators. They do only get like 2 issues as year though, people forget that it is legal to ignore other people :-)
Oh well.
The project is a followup to the earlier M. genitalium whole cell model by Covert lab which modelled Mycoplasma genitalium. E. Coli has 8x more genes (500 vs 4k), but it the undisputed bacterial model organism and as such has been studied much more thoroughly. It also reproduces faster than Mycoplasma (20 minutes vs a few hours), which is a huge advantages for validation/exploratory experiments.
The project has a partial dependency on the proprietary optimization software CPLEX which is freeware, for students, not sure what it is used for exactly, from the comment in the requirements.txt the dependency is only partial.
This project makes Ciro Santilli think of the E. Coli as an optimization problem. Given such external nutrient/temperature condition, which DNA sequence makes the cell grow the fastest? Balancing metabolites feels like designing a Factorio speedrun.
There is one major thing missing thing in the current model: promoters/transcription factor interactions are not modelled due to lack/low quality of experimental data: github.com/CovertLab/WholeCellEcoliRelease/issues/21. They just have a magic direct "transcription factor to gene" relationship, encoded at reconstruction/ecoli/flat/foldChanges.tsv in terms of type "if this is present, such protein is expressed 10x more". Transcription units are not implemented at all it appears.
Everything in this section refers to version 7e4cc9e57de76752df0f4e32eca95fb653ea64e4, the code drop from November 2020, and was tested on Ubuntu 21.04 with a docker install of docker.pkg.github.com/covertlab/wholecellecolirelease/wcm-full with image id 502c3e604265, unless otherwise noted.
SQL standard version by Ciro Santilli 34 Updated +Created
UPDATE (SQL) by Ciro Santilli 34 Updated +Created
SQL COUNT function by Ciro Santilli 34 Updated +Created
Have a look at some interesting examples under nodejs/sequelize/raw/many_to_many.js.
Proca equation by Ciro Santilli 34 Updated +Created
eGroups by Ciro Santilli 34 Updated +Created
Company co-founded by Scott Hassan, early Google programmer at Stanford University, and Carl Victor Page, Jr., Larry Page's older brother.
They were an email list management website, and became Yahoo! Groups after the acquisition.
The company was sold to Yahoo! in August 2000 for $432m and became Yahoo! Groups. They managed to miraculously dodge the Dot-com bubble, which mostly poppet in 2021. After the acquisition, Yahoo started to redirect them to: groups.yahoo.com as can be seen on the Wayback Machine: web.archive.org/web/20000401000000*/egroups.com The first archive of groups.yahoo.com is from February 2001: web.archive.org/web/20010202055100/http://groups.yahoo.com/ and it unsurprisingly looks basically exactly like eGroups.

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