The best articles by Ciro Santilli Updated 2025-07-16
These are the best articles ever authored by Ciro Santilli, most of them in the format of Stack Overflow answers.
Ciro posts update about new articles on his Twitter accounts.
Some random generally less technical in-tree essays will be present at: Section "Essays by Ciro Santilli".
- Trended on Hacker News:
- CIA 2010 covert communication websites on 2023-06-11. 190 points, a mild success.
- x86 Bare Metal Examples on 2019-03-19. 513 points. The third time something related to that repo trends. Hacker news people really like that repo!
- again 2020-06-27 (archive). 200 points, repository traffic jumped from 25 daily unique visitors to 4.6k unique visitors on the day
- How to run a program without an operating system? on 2018-11-26 (archive). 394 points. Covers x86 and ARM
- ELF Hello World Tutorial on 2017-05-17 (archive). 334 points.
- x86 Paging Tutorial on 2017-03-02. Number 1 Google search result for "x86 Paging" in 2017-08. 142 points.
- x86 assembly
- What does "multicore" assembly language look like?
- What is the function of the push / pop instructions used on registers in x86 assembly? Going down to memory spills, register allocation and graph coloring.
- Linux kernel
- What do the flags in /proc/cpuinfo mean?
- How does kernel get an executable binary file running under linux?
- How to debug the Linux kernel with GDB and QEMU?
- Can the sys_execve() system call in the Linux kernel receive both absolute or relative paths?
- What is the difference between the kernel space and the user space?
- Is there any API for determining the physical address from virtual address in Linux?
- Why do people write the
#!/usr/bin/envpython shebang on the first line of a Python script? - How to solve "Kernel Panic - not syncing: VFS: Unable to mount root fs on unknown-block(0,0)"?
- Single program Linux distro
- QEMU
- gcc and Binutils:
- How do linkers and address relocation works?
- What is incremental linking or partial linking?
- GOLD (
-fuse-ld=gold) linker vs the traditional GNU ld and LLVM ldd - What is the -fPIE option for position-independent executables in GCC and ld? Concrete examples by running program through GDB twice, and an assembly hello world with absolute vs PC relative load.
- How many GCC optimization levels are there?
- Why does GCC create a shared object instead of an executable binary according to file?
- C/C++: almost all of those fall into "disassemble all the things" category. Ciro also does "standards dissection" and "a new version of the standard is out" answers, but those are boring:
- What does "static" mean in a C program?
- In C++ source, what is the effect of
extern "C"? - Char array vs Char Pointer in C
- How to compile glibc from source and use it?
- When should
static_cast,dynamic_cast,const_castandreinterpret_castbe used? - What exactly is
std::atomicin C++?. This answer was originally more appropriately entitled "Let's disassemble some stuff", and got three downvotes, so Ciro changed it to a more professional title, and it started getting upvotes. People judge books by their covers. notmain.o 0000000000000000 0000000000000017 W MyTemplate<int>::f(int) main.o 0000000000000000 0000000000000017 W MyTemplate<int>::f(int)Code 1.. From: What is explicit template instantiation in C++ and when to use it?nmoutputs showing that objects are redefined multiple times across files if you don't use template instantiation properly
- IEEE 754
- What is difference between quiet NaN and signaling NaN?
- In Java, what does NaN mean?
Without subnormals: +---+---+-------+---------------+-------------------------------+ exponent | ? | 0 | 1 | 2 | 3 | +---+---+-------+---------------+-------------------------------+ | | | | | | v v v v v v ----------------------------------------------------------------- floats * **** * * * * * * * * * * * * ----------------------------------------------------------------- ^ ^ ^ ^ ^ ^ | | | | | | 0 | 2^-126 2^-125 2^-124 2^-123 | 2^-127 With subnormals: +-------+-------+---------------+-------------------------------+ exponent | 0 | 1 | 2 | 3 | +-------+-------+---------------+-------------------------------+ | | | | | v v v v v ----------------------------------------------------------------- floats * * * * * * * * * * * * * * * * * ----------------------------------------------------------------- ^ ^ ^ ^ ^ ^ | | | | | | 0 | 2^-126 2^-125 2^-124 2^-123 | 2^-127Code 2.Visualization of subnormal floating point numbers vs what IEEE 754 would look like without them. From: What is a subnormal floating point number?
- Computer science
- Algorithms
Figure 5. Average insertion time into heaps, binary search tree and hash maps of the C++ standard library. Source. From: Heap vs Binary Search Tree (BST)
- Is it necessary for NP problems to be decision problems?
- Polynomial time and exponential time. Answered focusing on the definition of "exponential time".
- What is the smallest Turing machine where it is unknown if it halts or not?. Answer focusing on "blank tape" initial condition only. Large parts of it are summarizing the Busy Beaver Challenge, but some additions were made.
- Algorithms
- Git
| 0 | 4 | 8 | C | |-------------|--------------|-------------|----------------| 0 | DIRC | Version | File count | ctime ...| 0 | ... | mtime | device | 2 | inode | mode | UID | GID | 2 | File size | Entry SHA-1 ...| 4 | ... | Flags | Index SHA-1 ...| 4 | ... |Code 3.ASCII art depicting the binary file format of the Git index file. From: What does the git index contain EXACTLY?tree {tree_sha} {parents} author {author_name} <{author_email}> {author_date_seconds} {author_date_timezone} committer {committer_name} <{committer_email}> {committer_date_seconds} {committer_date_timezone} {commit message}Code 4.Description of the Git commit object binary data structure. From: What is the file format of a git commit object data structure?- How do I clone a subdirectory only of a Git repository?
- Python
- Web technology
- OpenGL
Figure 7. OpenGL rendering output dumped to a GIF file. Source. From: How to use GLUT/OpenGL to render to a file?- What are shaders in OpenGL?
- Why do we use 4x4 matrices to transform things in 3D?
Figure 10. Sinusoidal circular wave heatmap generated with an OpenGL shader at 60 FPS on SDL. Source.
- Node.js
- Ruby on Rails
- POSIX
- What is POSIX? Huge classified overview of the most important things that POSIX specifies.
- Systems programming
- What do the terms "CPU bound" and "I/O bound" mean?
Figure 12. Plot of "real", "user" and "sys" mean times of the output of time for CPU-bound workload with 8 threads. Source. From: What do 'real', 'user' and 'sys' mean in the output of time?+--------+ +------------+ +------+ | device |>---------------->| function 0 |>----->| BAR0 | | | | | +------+ | |>------------+ | | | | | | | +------+ ... ... | | |>----->| BAR1 | | | | | | +------+ | |>--------+ | | | +--------+ | | ... ... ... | | | | | | | | +------+ | | | |>----->| BAR5 | | | +------------+ +------+ | | | | | | +------------+ +------+ | +--->| function 1 |>----->| BAR0 | | | | +------+ | | | | | | +------+ | | |>----->| BAR1 | | | | +------+ | | | | ... ... ... | | | | | | +------+ | | |>----->| BAR5 | | +------------+ +------+ | | | ... | | | +------------+ +------+ +------->| function 7 |>----->| BAR0 | | | +------+ | | | | +------+ | |>----->| BAR1 | | | +------+ | | ... ... ... | | | | +------+ | |>----->| BAR5 | +------------+ +------+Code 5.Logical struture PCIe device, functions and BARs. From: What is the Base Address Register (BAR) in PCIe?
- Electronics
- Raspberry Pi
Figure 13. Raspberry Pi 2 directly connected to a laptop with an Ethernet cable. Image from answer to: How to hook up a Raspberry Pi via Ethernet to a laptop without a router?
Figure 14. . Image from answer to: How to hook up a Raspberry Pi via Ethernet to a laptop without a router? 
Figure 15. . Image from answer to: How to emulate the Raspberry Pi 2 on QEMU? 
Figure 16. Bare metal LED blinker program running on a Raspberry Pi 2. Image from answer to: How to run a C program with no OS on the Raspberry Pi?
- Raspberry Pi
- Computer security
- Media
Video 2. Canon in D in C. Source.The original question was deleted, lol...: How to programmatically synthesize music?- How to resize a picture using ffmpeg's sws_scale()?
- Is there any decent speech recognition software for Linux? ran a few examples manually on
vosk-apiand compared to ground truth.
- Eclipse
- Computer hardware
- Scientific visualization software
Figure 17. VisIt zoom in 10 million straight line plot with some manually marked points. Source. From: Section "Survey of open source interactive plotting software with a 10 million point scatter plot benchmark by Ciro Santilli"
- Numerical analysis
- Computational physics
- Register transfer level languages like Verilog and VHDL
- Verilog:
Figure 19. . See also: Section "Verilator interactive example"
- Verilog:
- Android
Video 4. Android screen showing live on an Ubuntu laptop through ADB. Source. From: How to see the Android screen live on an Ubuntu desktop through ADB?
- Debugging
- Program optimization
- What is tail call optimization?
Figure 21. . Source. The answer compares gprof, valgrind callgrind, perf and gperftools on a single simple executable.
- Data
Figure 22. Mathematics dump of Wikipedia CatTree. Source. In this project, Ciro Santilli explored extracting the category and article tree out of the Wikipedia dumps.
- Mathematics
Figure 23. Diagram of the fundamental theorem on homomorphisms by Ciro Santilli (2020)Shows the relationship between group homomorphisms and normal subgroups.- Section "Formalization of mathematics": some early thoughts that could be expanded. Ciro almost had a stroke when he understood this stuff in his teens.
Figure 24. Simple example of the Discrete Fourier transform. Source. That was missing from Wikipedia page: en.wikipedia.org/wiki/Discrete_Fourier_transform!
- Network programming
- Physics
- What is the difference between plutonium and uranium?
Figure 25. Spacetime diagram illustrating how faster-than-light travel implies time travel. From: Does faster than light travel imply travelling back in time?
- Biology
Figure 26. Top view of an open Oxford Nanopore MinION. Source. From: Section "How to use an Oxford Nanopore MinION to extract DNA from river water and determine which bacteria live in it"
Figure 27. Mass fractions in a minimal growth medium vs an amino acid cut in a simulation of the E. Coli Whole Cell Model by Covert Lab. Source. From: Section "E. Coli Whole Cell Model by Covert Lab"
- Quantum computing
- Section "Quantum computing is just matrix multiplication"
Figure 28. Visualization of the continuous deformation of states as we walk around the Bloch sphere represented as photon polarization arrows. From: Understanding the Bloch sphere.
- Bitcoin
- GIMP
Figure 29. GIMP screenshot part of how to combine two images side-by-side in GIMP?
- Home DIY
Figure 30. Total_Blackout_Cassette_Roller_Blind_With_Curtains.Source. From: Section "How to blackout your window without drilling"
- China
Covert Lab Updated 2025-07-16
Half-life Updated 2025-07-16
The half-life of radioactive decay, which as discovered a few years before quantum mechanics was discovered and matured, was a major mystery. Why do some nuclei fission in apparently random fashion, while others don't? How is the state of different nuclei different from one another? This is mentioned in Inward Bound by Abraham Pais (1988) Chapter 6.e Why a half-life?
The term also sees use in other areas, notably biology, where e.g. RNAs spontaneously decay as part of the cell's control system, see e.g. mentions in E. Coli Whole Cell Model by Covert Lab.
How to teach Exams and homework are useless, only projects matter Updated 2025-07-16
See: Section "Exam".
The only thing that matters is that students aim towards the goals described at explain how to make money with the lesson.
Any "homework for which the student cannot use existing resources available online" is a waste of time.
The ideal way to go about it is to reach some intermediate milestone, and then document it. You don't have to do the hole thing! Just go until your patience with it runs out. But while you are doing it, go as deep and wide as you possibly can, without mercy.
This is actually how Ciro Santilli learns new subjects he is curious about, even as an adult! Some examples:
M. genitalium whole cell model by Covert lab Updated 2025-07-16
www.wholecellviz.org/viz.php awesome visualization of simtk, paper: www.ncbi.nlm.nih.gov/pmc/articles/PMC3413483/ A Whole-Cell Computational Model Predicts Phenotype from Genotype - 2013 - Jonathan R. Karr.
Followed up by the E. Coli Whole Cell Model by Covert Lab.
Molecular biology feels like systems programming Updated 2025-07-16
Whenever Ciro Santilli learns about molecular biology, he can't help but to feel that it feels like programming, and notably systems programming and computer hardware design.
In some sense, the comparison is obvious: DNA is clearly a programmable medium like any assembly language, but still, systems programming did give Ciro some further feelings.
- The most important analogy perhaps is observability, or more precisely the lack of it. For the computer, this is described at: The lower level you go into a computer, the harder it is to observe things.And then, when Ciro started learning a bit about biology techniques, he started to feel the exact same thing.For example when he played with E. Coli Whole Cell Model by Covert Lab, the main thing Ciro felt was: it is going to be hard to verify any of this data, because it is hard/impossible to know the concentration of each element in a cell as a function of time.More generally of course, this is exactly why making any biology discovery is so hard: we can't easily see what's going on inside the cell, and have to resort to indirect ways of doing so..This exact idea was highlighted by I should have loved biology by James Somers:
For a computer scientist, a biologist's methods can seem insane; the trouble comes from the fact that cells are too small, too numerous, too complex to analyze the way a programmer would, say in a step-by-step debugger.
And then just like in software, some of the methods biologists use to overcome the lack of visibility have direct software analogues:- add instrumentation to cells, e.g. GFP tagging comes to mind
- emulation, e.g. E. Coli Whole Cell Model by Covert Lab
- The boot process is another one. E.g. in x86 the way that you start in 16-bit mode, largely compatible into the 70's, then move to 32-bit and finally 64, does feel a lot the way a earlier stages of embryo development looks more and more like more ancient animals.
Ciro likes to think that maybe that is why a hardcore systems programmer like Bert Hubert got into molecular biology.
Some other people who mention similar things:
- I should have loved biology by James Somers highlights the computer abstraction layer analogy between the two: