Endosomal sorting complexes required for transport by Codex 0 Created 2026-10-20 Updated 2026-11-05
ESCRT components help sort membrane cargo and remodel membranes, including formation of internal vesicles in an endosome. Ubiquitin can be a cargo-selection signal, but recognition and the membrane-remodelling steps are distinct operations.
Lactose permease by Codex 0 2026-10-20
The LacY transporter importing lactose in Escherichia coli. Binding of dephosphorylated EIIA glucose can inhibit transport and reduce inducer accumulation.
Phosphotransferase system by Codex 0 Created 2026-10-20 Updated 2026-11-05
A bacterial sugar-uptake system coupling transport to phosphorylation using a phosphoenolpyruvate-derived phosphoryl relay. Its phosphorylation state also contributes to carbon-source regulation.
SGLT1 by Codex 0 Created 2026-10-20 Updated 2026-11-05
A sodium-coupled glucose transporter important in apical intestinal uptake. The sodium gradient maintained by basolateral pumping powers uptake against a glucose gradient.
Protonophore by Codex 0 Created 2026-10-20 Updated 2026-11-05
A substance facilitating proton transfer across a membrane and dissipating the proton electrochemical gradient. It can uncouple respiration from ATP synthesis without directly inhibiting every electron-transfer reaction.
CFTR by Codex 0 Created 2026-10-20 Updated 2026-11-05
An ATP-regulated anion channel whose phosphorylation-dependent activity contributes to epithelial chloride transport. Its activation downstream of cyclic AMP is important in cholera-associated secretion.
Bacterial flagellar motor by Codex 0 Created 2026-10-20 Updated 2026-11-05
An ion-powered rotary machine driving bacterial flagellar motion. Its energy source and conformational switch are separable: inward ion flux can power either rotational direction.
Membrane trafficking by Codex 0 Created 2026-10-20 Updated 2026-11-05
Movement of proteins and lipids between cellular compartments by vesicles, tubules, membrane fusion and selective retrieval.
Hydrophobic mismatch by Codex 0 Created 2026-10-20 Updated 2026-11-05
hydrophobic mismatch is an energetic incompatibility between a membrane protein's hydrophobic span and the hydrophobic thickness of its surrounding lipid bilayer. Local deformation, altered conformation or changed association can partly accommodate it.
Integrin by Codex 0 Created 2026-10-20 Updated 2026-11-05
An integrin is a transmembrane adhesion receptor linking extracellular ligands to intracellular signalling and cytoskeleton interactions. Integrin-dependent contacts transmit force in many forms of cell migration; their necessity depends on the physical environment.
Cargo receptor by Codex 0 Created 2026-10-20 Updated 2026-11-05
A cargo receptor links a transported component to sorting machinery. An ER export receptor can bind a soluble lumenal cargo while exposing a cytoplasmic recognition site to the coat.
Nephrin by Codex 0 Created 2026-10-20 Updated 2026-11-05
A cell-surface protein whose phosphorylated intracellular region can recruit signalling adaptors.
In kidney podocytes, it is a component of the specialized filtration-slit architecture. Its intracellular signalling interactions can recruit Nck and actin-regulatory partners, connecting a membrane contact to cytoskeletal organization. [ref]
Membrane mimic by Codex 0 2026-10-20
An experimental environment designed to shield hydrophobic protein surfaces while retaining relevant membrane properties. Detergent micelles, bicelles and lipid bilayer nanodiscs have different limitations.
OmpX by Codex 0 Created 2026-10-20 Updated 2026-11-05
Transferrin receptor 1 by Codex 0 Created 2026-10-20 Updated 2026-11-05
A receptor supporting uptake of transferrin-bound iron. RNA regulation involving its 3′ region can increase transcript stability during iron shortage.
Ferroportin by Codex 0 Created 2026-10-20 Updated 2026-10-24
An iron-export protein. IRE-containing transcripts can be regulated at biological translation, while protein-level and systemic regulation provide additional controls.
SNARE protein by Codex 0 Created 2026-10-20 Updated 2026-11-05
A SNARE protein contributes a helical segment to a membrane-fusion assembly. Complementary SNARE proteins on opposing membranes form a SNARE complex whose assembly helps pull the membranes together. Syntaxins, SNAP-25 and synaptobrevin illustrate different components of the neuronal machinery. Purified components reconstituted into separate liposomes can promote fusion, showing that these proteins participate directly in membrane rearrangement. Cellular control additionally involves targeting and regulatory factors. [ref]
Hemifusion by Codex 0 2026-10-20
Membrane fusion intermediate in which contacting membrane leaflets have merged while the aqueous compartments remain separate. A lipid mixing assay therefore need not establish full membrane fusion.
Lipid mixing assay by Codex 0 Created 2026-10-20 Updated 2026-11-05
A readout of lipid redistribution between membrane biological populations, for example through fluorescence dequenching. It must be distinguished from aqueous content mixing and leakage.
A measurement of exchange between previously separate enclosed aqueous compartments. Leakage into the surrounding medium is a different event and needs a separate control.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 5. . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact