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The folded site frequency spectrum counts variable sites by the less frequent allele count, without identifying which allele is ancestral. With four sampled sequences, counts one and three both contribute to the class, whereas count two gives the class.
Nonrandom distribution of genetic variation among biological populations, shaped by ancestry, movement, reproduction and drift.
For example, an allele can be common in one ancestry group and rare in another even without a causal effect on a measured trait. If trait prevalence also differs between groups, a pooled association can reflect ancestry. Modelling structure helps distinguish that source of association from a locus-specific effect. [ref]
Talking Glossary of Genomic and Genetic Terms by NHGRI. Population Genomics and Genome-Wide Association Studies
Conservation genetics applies genetic evidence to maintaining biodiversity and viable biological populations. Measures of diversity, inbreeding and gene flow can identify isolation or help evaluate a proposed genetic rescue. Low diversity alone does not identify every ecological threat; demographic and habitat information remain necessary. In the Florida panther case, genetic and survival measurements together were used to assess restoration rather than treating introduced ancestry alone as proof of success. [ref]
Genetic Restoration of the Florida Panther by Warren E. Johnson and others. Johnson and others, 2010, demographic and genetic restoration results
The sex ratio is the relative abundance of sex classes in a specified biological population or life stage. It can be expressed as a ratio or as a fraction, so the convention and denominator must be stated. A birth sex ratio can differ from the adult or breeding sex ratio through unequal survival or participation in reproduction. This matters for population genetics because the number of successful breeders can differ from the total census size. [ref]
A comparison of nonsynonymous and synonymous polymorphism and divergence. Under a simple neutral model their ratios match. An excess of nonsynonymous divergence can support adaptive fixation, but mildly deleterious polymorphism, changing demography and site-class assumptions affect interpretation.[ref]
The counts or proportions of segregating variants at different sample frequencies. Unfolded spectra use an inferred ancestral state; folded spectra use minor-allele counts.
The number of reactive connections available on a monomer under a specified polymerization chemistry. One-functional units can terminate chains, two-functional units can build chains, and higher functionality can produce branching and networks.
An overdamped bead-spring model of polymer dynamics with local friction and no long-range hydrodynamic interaction. For an ideal unentangled chain of identical frictional units, the centre-of-mass diffusion coefficient is proportional to and the longest internal relaxation time to . A tagged segment has an intermediate-time mean-square displacement proportional to before ordinary whole-chain diffusion dominates. Entanglement adds constraints beyond this model.
A dilute-solution bead-spring model including solvent-mediated hydrodynamic interactions. In its scaling regime, a chain of size has translational diffusion coefficient of order and longest relaxation time of order . Intermediate-time segment mean-square displacements scale as . Screening of hydrodynamic interactions in a concentrated solution changes the regime toward Rouse model behaviour; constraints from polymer entanglement require additional physics.
A polymer conformation model assigning allowed torsional states and statistical weights to successive backbone bonds. Correlations between torsional states can represent local stiffness beyond the fixed-angle, uniformly rotating freely rotating chain.
An interface changes polymer conformations through segment-surface affinity, solvent selectivity and confinement. Adsorbed chains make bound trains, intervening loops and free tails; end-grafted chains cross from isolated mushrooms to overlapping brushes as coverage rises. Surface binding energy competes with chain conformational entropy and crowding.
The change of an isolated flexible polymer from an expanded coil toward a dense polymer globule as its solvent becomes less favorable. In the Flory approximation, , where the positive three-segment coefficient prevents collapse to zero size. Positive gives swollen-coil scaling, gives the theta temperature condition, and negative favors a dense state with . Finite chain length rounds the change; polymer aggregation is a distinct multi-chain process and must be controlled in an experiment.
A permanently cross-linked polymeric material that does not undergo reversible melt flow like an uncrosslinked thermoplastic.
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 2. You can publish local OurBigBook lightweight markup files to either OurBigBook.com or as a static website.Figure 3. Visual Studio Code extension installation.Figure 5. . You can also edit articles on the Web editor without installing anything locally. Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





