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A microcentrifuge performs centrifugation of small sample tubes, as used to concentrate biological cells and separate debris in the PV92 teaching experiment.
A scientist who investigates biological systems using physical methods and models. A biophysicist may connect single-molecule measurements with molecular mechanisms or use collective physical behavior to explain tissue organization.
Core practical 4: Investigate the effect of sucrose concentration on pollen tube growth by Pearson Education Ltd by
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Seven-page teacher, student and technician worksheets in EDEXCEL Biology B Teacher Resource Pack 1, issued by Pearson Education Ltd. The printed copyright is 2015; no separate publication or revision date or personal byline is established. The teacher notes credit adaptation from several protocols including SAPS.
Observing the growth of pollen tubes (Practical Biology) by
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Online text: practicalbiology.org/cells-to-systems/reproductive-systems/observing-the-growth-of-pollen-tubes
Published educational practical on Practical Biology, a Royal Society of Biology site. No personal byline or publication date is stated. September 2009 is a health and safety check; October 2011 is the access date of a linked website. Neither establishes publication.
Cited passages: Technical note 3; Teaching notes, male gametophyte, tube shape and the steps between pollen germination and seed formation.
A Reversible Photoreaction Controlling Seed Germination by Harry Alfred Borthwick and others by
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By Harry Alfred Borthwick, Sterling Brown Hendricks, Marion W. Parker, Eben H. Toole, Vivian Kearns Toole.
Published in Proceedings of the National Academy of Sciences 38(8), pp. 662–666, August 1952. The communicated date, 7 June 1952, is a manuscript date.[ref]
https://pmc.ncbi.nlm.nih.gov/articles/PMC1063632/. Primary article author roster and publication metadata
Online text: www.pnas.org/doi/pdf/10.1073/pnas.38.8.662
Cited passages: pp. 662–663: wet blotters, covered dishes, darkness, 20 °C and a two-prism glass spectrograph; p. 664: seven lots of 200 seeds, 16-hour dark imbibition, one-minute red and four-minute far-red exposures, and a two-day endpoint; p. 665, Table 1: qualitative red/far-red reversal and incomplete suppression; p. 663: pigment identification explicitly deferred.
Seed dormancy and the control of germination by William E. Finch-Savage and Gerhard Leubner-Metzger by
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Published in New Phytologist 171(3), pp. 501–523; first published online 14 July 2006.[ref]
https://doi.org/10.1111/j.1469-8137.2006.01787.x. Publisher author credits, volume, pages and first-publication date
Online text: doi.org/10.1111/j.1469-8137.2006.01787.x
Cited passages: Summary, p. 501; §II.1 Seed structure and seed germination, p. 502; §II.2 Definition of seed dormancy, p. 502.
University of Oklahoma K20 Center educational laboratory handout adapted from the 2001 AP Biology Lab Manual. The associated lesson was published on 8 November 2022; that is not an established publication date for this undated attachment. Its tables are blank.
The checkpoint delaying anaphase in response to chromosome monoorientation is mediated by an inhibitory signal produced by unattached kinetochores by Conly L. Rieder and others by
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Online text: doi.org/10.1083/jcb.130.4.941
Experimental article published on 15 August 1995 in Journal of Cell Biology 130(4), pp. 941–948. The full author PDF was inspected at the separately linked copy.
Cited passages: pp. 941–942, Abstract and Materials and Methods: Cell Culture; Laser Microsurgery and Video-enhanced Light Microscopy; pp. 943–947, arm-cutting control, Table I, Figures 1, 5 and 6; destruction of the last unattached kinetochore and correlative electron microscopy.
Overview of Circadian Rhythms by Martha Hotz Vitaterna and others by
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Online text: pmc.ncbi.nlm.nih.gov/articles/PMC6707128/
Authored review published in 2001 in Alcohol Research & Health 25(2), pp. 85–93. The actually inspected PDF copy is linked below; the publisher record is hosted by PubMed Central.
Cited passages: Vitaterna, Takahashi and Turek (2001), Overview of Circadian Rhythms, pp. 85–86, Biological Rhythms and Basic Properties of Circadian Rhythms; p. 92, glossary entries Entrainment, Free running and Masking; pp. 86–87, Figure 1A; p. 92, Free running; pp. 86–87, synchronization to external cues; p. 92, Entrainment and Zeitgeber.
Mutagenesis and Mapping of a Mouse Gene, Clock, Essential for Circadian Behavior by Martha Hotz Vitaterna and others by
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By Martha Hotz Vitaterna, David P. King, Anne-Marie Chang, Jon M. Kornhauser, Phillip L. Lowrey, J. David McDonald, William F. Dove, Lawrence H. Pinto, Fred W. Turek, Joseph S. Takahashi.
Online text: pmc.ncbi.nlm.nih.gov/articles/PMC3839659/
Experimental article published on 29 April 1994 in Science 264(5159), pp. 719–725. The 2013 PMC availability date is distinct from journal publication.
Cited passages: Figure 2A–C; Table 2 and discussion of activity counts and loss of rhythmicity; References and Notes 10 and 14; Vitaterna and others (1994), Mutagenesis and Mapping of a Mouse Gene, Clock, Essential for Circadian Behavior, Figure 1 and References and Notes 6–10.
Protein Preparation Handbook, Thermo Fisher Scientific by
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Manufacturer scientific handbook issued by Thermo Fisher Scientific. The printed copyright range is 2016–2018; the document code does not establish its publication year. Figure 9A measures salt removal through conductivity, while Figure 8 measures protein retention separately; neither test alone establishes preserved enzymatic function.
Cited passages: Protein Preparation Handbook, printed p. 11, Figure 8 and caption: membrane series, preparation, duration, temperature and protein assay; the separately plotted vitamin B12 uses a different optical readout; Protein Preparation Handbook, printed p. 11, Figure 9A and caption: sample preparation, 10K membrane, baths, conductivity and conventional-dialysis reference.
Dialysis: an overview, Pierce Biotechnology technical note by
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Manufacturer scientific technical note issued by Pierce Biotechnology, with copyright 2008 Thermo Fisher Scientific. Neither first publication nor revision date is established. The guidance describes membrane retention conventions and limitations, rather than guaranteeing recovery for every sample.
Cited passages: Dialysis: an overview, Tech Tip 20, p. 1, Dialysis is Diffusion Through a Semi-Permeable Membrane; Tech Tip 20, p. 1, Factors Affecting Dialysis Rate: MWCO definition and globular reference molecules; Tech Tip 20, p. 2, Other Factors in Dialysis: water transport, volume change and nonspecific membrane binding; Tech Tip 20, pp. 1-2, renewed gradients and Other Factors in Dialysis.
Myt1: a membrane-associated inhibitory kinase that phosphorylates Cdc2 on both threonine-14 and tyrosine-15 by P. R. Mueller and others by
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Published in Science.
Online text: pubmed.ncbi.nlm.nih.gov/7569953/
Cited passages: Mueller, Coleman, Kumagai and Dunphy (1995), abstract: Xenopus clone, both inhibitory sites and immunodepletion result.
Human Wee1 kinase inhibits cell division by phosphorylating p34cdc2 exclusively on Tyr15 by Clare McGowan and others by
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Published in The EMBO Journal.
Online text: pmc.ncbi.nlm.nih.gov/articles/PMC413177/
Cited passages: McGowan and Russell (1993), abstract: purified human Wee1, Tyr15 specificity, no detectable Thr14 phosphorylation, and Lys114 mutant control.
Quantitative Reconstitution of Mitotic CDK1 Activation in Somatic Cell Extracts by Richard W. Deibler and others by
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Published in Molecular Cell.
Online text: pmc.ncbi.nlm.nih.gov/articles/PMC2882237/
Cited passages: Deibler and Kirschner (2010), Experimental Procedures, “Tissue Culture, Flow Cytomtery, and Somatic Cell Extract Preparation”; Figure 2A; Deibler and Kirschner (2010), “H1 Kinase Assays”; Results, “A Three-Stage Activation Profile of CDK1 by Cyclin B”, reported Figure S2A inhibitor result; Figure 2B; Results, “Establishing a Somatic Cell Extract System for Mitotic Entry”; “A Three-Stage Activation Profile of CDK1 by Cyclin B”.
Role of phosphorylation in p34cdc2 activation: identification of an activating kinase by M. J. Solomon and others by
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Published in Molecular Biology of the Cell.
Online text: pmc.ncbi.nlm.nih.gov/articles/PMC275499/
Cited passages: Solomon, Lee and Kirschner (1992), abstract: cyclin-binding triple mutant and activating phosphorylation of the kinase-inactive K33R mutant; Solomon, Lee and Kirschner (1992), abstract: mapped Xenopus Thr14/Tyr15, loss of activation with Thr161→Ala, and cyclin binding by the triple mutant.
IP3 Receptors: Toward Understanding Their Activation by Colin W. Taylor and Stephen C. Tovey by
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Online text: pmc.ncbi.nlm.nih.gov/articles/PMC2982166/
Cited passages: Taylor and Tovey, IP3 Receptors: Toward Understanding Their Activation, Abstract; regulation by cytosolic Ca2+ and Structural Determinants of IP3R Activation: three subtypes and tetrameric assemblies.
Effect of inositol-1,4,5-trisphosphate on isolated subcellular fractions of rat pancreas by H. Streb and others by
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Publisher: Springer.
Published in The Journal of Membrane Biology.
Online text: pubmed.ncbi.nlm.nih.gov/6334162/
An adenosine 3′,5′-monophosphate-dependant protein kinase from rabbit skeletal muscle by D. A. Walsh and others by
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Published in Journal of Biological Chemistry 243(13), 3763-3765.
Cited passages: Walsh, Perkins and Krebs, 1968, printed p. 3763 Summary and introductory paragraphs: cAMP-dependent kinase and phosphorylase kinase activation.
The regulatory component of adenylate cyclase. Purification and properties by P. C. Sternweis and others by
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Published in Journal of Biological Chemistry 256(22), 11517-11526.
Online text: pubmed.ncbi.nlm.nih.gov/6271754/
Cited passages: Abstract, properties 2-4: purified guanine-nucleotide regulatory component reconstitutes hormone-stimulated adenylyl cyclase.
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 2. You can publish local OurBigBook lightweight markup files to either OurBigBook.com or as a static website.Figure 3. Visual Studio Code extension installation.Figure 5. . You can also edit articles on the Web editor without installing anything locally. Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





