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A row-stochastic matrix has nonnegative entries and each row sums to one. For a time-homogeneous Discrete-time Markov chain, its transition matrix has entriesIf a state has zero probability at time $n$, this row is specified by the model's Markov kernel, rather than recovered by conditioning on that zero-probability event. Rows index departure states and columns arrival states. Writing the current probability distribution as a row vector ${\mu }_n$ givesThe row-sum condition ensures that matrix multiplication preserves total probability. Under a column convention the evolution uses the transpose; the convention must accompany the formula.

For the sunny/rainy transition matrix, direct matrix multiplication givesIn particular, $(P^2{)}_{SS}=0.8\times 0.8+0.2\times 0.4=0.72$. The two terms sum the disjoint paths $S\to S\to S$ and $S\to R\to S$. Requiring both subsequent days to be sunny has probability $0.64$; requiring only the second day to be sunny permits the extra path through rain.

Generally $(P^n{)}_{ij}$ is the $n$-step transition probability. The identity $P^{m+n}=P^m{P}^n$ is the discrete-time Chapman-Kolmogorov equation: sum over the intermediate state. This makes matrix powers useful for forecasting many steps without enumerating every path individually.

The matrix multiplication algorithm of Volker Strassen using seven half-size block products and quadratically many scalar additions per recursion level. Its recurrence is $T(n)=7T(n/2)+\Theta (n^2)$, giving $\Theta (n^{{\log }_{2}7})$ arithmetic operations by the Master theorem.^[ref]

In the Heisenberg picture, an observable without explicit time dependence hasHere $\hslash$ is the reduced Planck constant. An emitted photon on a transition $n\to m$ with $E_n>E_m$ has positive angular frequency $(E_n-E_m)/\hslash =|{\omega }_{mn}|$. The sign of the array's quantum phase follows its index convention; it is not a negative measured photon frequency. The frequencies involve differences of energy levels, rather than the absolute values $E_n/\hslash$. Adding a constant to $H$ leaves these frequencies unchanged.

Insert the complete orthonormal basis between two linear operators:The sum runs over intermediate states. The second identity follows by cancellation of $E_k$; it makes every term in the product acquire the same time factor $e^{i{\omega }_{mn}t}$. This is a useful reason for matrix multiplication: it composes the two indexed arrays consistently with the addition of transition frequencies. It does not multiply matching entries independently. Swapping $A$ and $B$ generally changes the intermediate-state sum and hence the result.

Given Pivoted LU decomposition $PA=LU$, the linear system $Ax=b$ is equivalent to $LUx=Pb$. Introduce the intermediate vector $y=Ux$: first use forward substitution to solve $Ly=Pb$, then back substitution to solve $Ux=y$. With unpivoted LU decomposition, $P=I$ is the identity matrix, so the first right-hand side is simply $b$.^[ref]

For the factors in Computed three-by-three LU decomposition and $b=(7,23,26{)}^T$, forward substitution givesThen back substitution givesDirect matrix multiplication verifies $A(1,2,3{)}^T=(7,23,26{)}^T$. More generally, the back substitution recurrence isThe direction matters: the last row contains only $x_n$, whereas the first row generally involves every unknown. No dense matrix inverse is needed for either triangular solve.

Take an isolated two-level system, or a spin one-half qubit, with Pauli matrices ${\sigma }_x,{\sigma }_z$. Let ${\sigma }_z|0⟩=|0⟩$ and ${\sigma }_z|1⟩=-|1⟩$. The initial and final Hamiltonian operators areThe energy gaps are ${\Delta }_i,{\Delta }_f$. Prepare the initial ground state $|0⟩$, with energy eigenvalue $-{\Delta }_i/2$. A final orthonormal eigenbasis isDirect matrix multiplication gives $H_f|g_f⟩=-{\Delta }_f|g_f⟩/2$ and $H_f|e_f⟩=+{\Delta }_f|e_f⟩/2$. The unchanged initial quantum state is $|0⟩=c|g_f⟩-s|e_f⟩$. Its new probability amplitudes are the inner products $c,-s$; the Born rule gives $p_g=c^2,p_e=s^2$. The angle between the real amplitude vectors is $\theta /2$, whereas the Hamiltonian axis on the Bloch sphere rotates through $\theta$.

At $\theta =\pi /3$, $c=\sqrt{3}/2$ and $s=1/2$, so the final energy measurement gives $-{\Delta }_f/2$ with probability $3/4$ and $+{\Delta }_f/2$ with probability $1/4$. At $\theta =0$ the initial ground state remains the final ground state; at $\theta =\pi$ it is the final excited energy eigenstate. These statements are about the new energy labels, not an instantaneous physical rotation of the quantum state.