Tricapped trigonal prismatic molecular geometry refers to a specific arrangement of atoms around a central atom in coordination complexes or polyhedral structures. In this geometry, a central atom is surrounded by six atoms or groups of atoms that occupy the corners of a trigonal prism, with additional atoms or groups "capping" the top and bottom faces of the prism.
Trigonal bipyramidal molecular geometry is a type of molecular shape that arises when a central atom is surrounded by five atoms or groups of atoms (ligands) in a specific arrangement. This geometry is characterized by: 1. **Arrangement of Atoms**: In a trigonal bipyramidal geometry, there are three atoms in a plane arranged in a triangle (equatorial positions) and two atoms above and below this plane (axial positions).
Trigonal pyramidal molecular geometry refers to a three-dimensional arrangement of atoms in a molecule where a central atom is bonded to three other atoms, forming the base of a pyramid, while a lone pair of electrons occupies the apex position. This shape arises due to the presence of a lone pair of electrons that exerts a repulsive force, causing the bonded atoms to be pushed down, resulting in a pyramidal arrangement.
Trizol, or TRIzol reagent, is a widely used reagent in molecular biology for the isolation of RNA, DNA, and proteins from biological samples. It is a phenol-based solution that facilitates the extraction of nucleic acids and proteins by separating them into different phases when mixed with a biological sample and subsequently centrifuged.
Two-hybrid screening is a molecular biology technique used to investigate protein-protein interactions within cells. It is particularly useful for identifying and characterizing interactions between different proteins, which is crucial for understanding cellular processes, signaling pathways, and the molecular mechanisms underlying various biological functions.
Ty5 is a type of retrotransposon found in the yeast Saccharomyces cerevisiae (baker’s yeast). Retrotransposons are genetic elements that can replicate and insert themselves into new locations within the genome, usually through a process called reverse transcription, which converts their RNA intermediate back into DNA. Ty5 belongs to the group of long terminal repeat (LTR) retrotransposons, characterized by the presence of repeated sequences at both ends of their DNA.
UGGT stands for "UDP-glucose:glycoprotein glucosyltransferase," which is an enzyme involved in the modification of glycoproteins. This enzyme plays a crucial role in the quality control and folding of glycoproteins in the endoplasmic reticulum. UGGT adds glucose residues to misfolded glycoproteins, which assists in their proper folding and quality assessment.
Ultrasensitivity refers to a phenomenon in biochemistry and cellular signaling whereby a small change in the concentration of a signaling molecule or stimulant can produce a disproportionately large response from a biological system. This occurs in various biological processes, including receptor signaling pathways, gene expression, and metabolic regulation. In ultrasensitive systems, the relationship between the input (e.g., ligand concentration) and the output (e.g., cellular response) is characterized by steep sigmoidal curves rather than linear responses.
In the context of molecular biology, "upstream" and "downstream" refer to the relative positions of different sequences within a gene or DNA fragment. 1. **Upstream**: This term refers to the regions of DNA that are located before (in the 5' direction) of a specific reference point, typically the transcription start site of a gene. Upstream regions often contain promoter sequences and other regulatory elements that play crucial roles in the initiation of transcription.
In the context of molecular biology and cellular signaling, "upstream" and "downstream" refer to the orientation of signaling pathways, processes, or gene regulation. ### Upstream - **Definition**: Upstream elements refer to components or signals that occur or act before a particular point in a pathway or process. - **Context**: In signaling pathways, upstream refers to the initial receptors, ligands, or signaling molecules that activate or regulate downstream processes.
Vanadyl ribonucleoside refers to a specific compound formed by the combination of vanadyl ions (vanadium in the +4 oxidation state) with ribonucleosides, which are nucleosides that contain ribose as their sugar component. Ribonucleosides are the building blocks of RNA and consist of a sugar (ribose) attached to a nitrogenous base (such as adenine, guanine, cytosine, or uracil).
In gene therapy, a vector refers to a vehicle used to deliver therapeutic genes into a patient's cells. The primary purpose of using vectors is to ensure that the introduced genetic material can effectively enter the target cells, express the desired protein, and potentially correct or alleviate the underlying cause of a genetic disorder. Vectors can be broadly categorized into two types: viral vectors and non-viral vectors. ### 1.
Veterinary virology is a specialized branch of veterinary medicine that focuses on the study of viruses that infect animals. This field encompasses various aspects, including the identification, characterization, and understanding of viral pathogens that cause diseases in domestic and wild animals. Veterinary virologists investigate the biology of these viruses, including their structure, genetics, and mechanisms of infection, as well as their interactions with the host's immune system.
Viability PCR (v-PCR) is a molecular biology technique used to differentiate live cells from dead cells in a sample, particularly in microbial analysis. This method leverages the polymerase chain reaction (PCR) to amplify genetic material from viable organisms while selectively excluding the genetic material from non-viable (dead) cells.
Vibrational circular dichroism (VCD) is a spectroscopic technique that measures the difference in the absorption of left-handed and right-handed circularly polarized light by chiral molecules. It is particularly useful for studying the chiral properties of molecules, which is important in fields such as chemistry, biochemistry, and pharmacology, where the 3D structure and its chiral configuration can significantly impact the behavior and interactions of molecular species.
WebGeSTer is a web-based tool designed for the visualization and analysis of genomic sequence data, particularly focused on genomic structural variants like structural rearrangements, copy number variations, and other complex genomic features. It aims to provide researchers with an accessible platform to explore and interpret genomic data efficiently. WebGeSTer typically allows users to: 1. **Visualize Genomic Data:** Users can view genomic information in a user-friendly interface, facilitating the interpretation of complex data sets.
Western blot is a widely used analytical technique in molecular biology and biochemistry to detect and quantify specific proteins in a sample. The process involves several key steps: 1. **Sample Preparation**: Proteins are extracted from cells or tissues and denatured, usually by heating and adding a reducing agent, to ensure that they unfold and are separated by size.
Whole genome sequencing (WGS) is a comprehensive method used to determine the complete DNA sequence of an organism's genome at a single time. This process involves analyzing all of an organism's genetic material, including coding regions (genes) and non-coding regions, providing a complete picture of the genetic information contained in the genome.
Zfp82, or zinc finger protein 82, is a member of the zinc finger protein family, which is characterized by the presence of zinc finger motifs. These motifs are specialized structural domains that can interact with DNA, RNA, or proteins, functioning primarily as transcription factors that regulate gene expression. The Zfp82 protein is involved in various biological processes, including development, cell differentiation, and possibly in the regulation of hormonal signaling.
A zinc finger inhibitor refers to a type of compound or molecule that can inhibit the function or activity of zinc finger proteins. Zinc finger proteins are a large family of proteins that are characterized by the presence of zinc finger motifs, which are structural motifs stabilized by the binding of zinc ions. These motifs enable the proteins to bind to DNA, RNA, or other proteins, playing crucial roles in a variety of biological processes, including gene regulation, signal transduction, and cellular differentiation.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 5. . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact