Lattice Microbes by Ciro Santilli 37 Updated 2025-07-16
GPU accelerated, simulates the Craig's minimized M. genitalium, JCVI-syn3A at a particle basis of some kind.
Lab head is the cutest-looking lady ever: chemistry.illinois.edu/zan, Zaida (Zan) Luthey-Schulten.
www.newyorker.com/magazine/2022/03/07/a-journey-to-the-center-of-our-cells A Journey to the Center of Our Cells (2022) by James Somers comments on M. genitalium in general, and in particular on the JCVI strains.
JCVI-syn3B by Ciro Santilli 37 Updated 2025-07-16
www.biorxiv.org/content/10.1101/2022.09.19.508583v1.full
CVI-syn3B strains differ from JCVI-syn3.0 by the presence of 19 additional non-essential genes that result in a more easily manipulated cell. JCVI-syn3B additionally includes a dual loxP landing pad that enables easy Cre recombinase mediated insertion of genes
It is also interesting to see how they are interested in co-culture with HeLa cells, presumably to enable infectious bacterial disease studies.
At biology.indiana.edu/news-events/news/2023/lennon-minimal-cells.html (2023) they let it re-evove to it it would regain some fitness, and it did.
Arkarya by Ciro Santilli 37 Updated 2025-07-16
Name of the clade of archaea plus eukarya proposed at: www.frontiersin.org/articles/10.3389/fmicb.2015.00717/full. Much better term than prokaryote as that is not a clade. Let's hope it catches on!
In the context of abstract algebra, the term "derivative algebra" often does not refer to a specific well-established area like group theory or ring theory, but it may relate to a couple of concepts in algebra associated with derivatives. One such area is the study of derivations in algebraic structures, particularly in the context of rings. ### Derivations in Algebras 1.
The Fox derivative is a mathematical concept related to fractional calculus and special functions. It generalizes the notion of derivatives to fractional orders, allowing for the differentiation of functions with non-integer orders. This concept is often used in areas such as signal processing, control theory, and other applied mathematics fields. In essence, the Fox derivative is defined using the framework of the Fox H-function, which is a general class of functions that encompasses many special functions used in mathematics and applied sciences.
Linear topology, also referred to as a **linear order topology** or **order topology**, is a concept in topology that arises from the properties of linearly ordered sets. The primary idea is to define a topology on a linearly ordered set that reflects its order structure.
Amoeba by Ciro Santilli 37 Updated 2025-07-16
This group is a mess.
But one thing you should really know, as often mentioned in Power, Sex, Suicide by Nick Lane (2006): they are all eukaryotes.
Because prokaryotes are fundamentally unable to do phagocytosis, because they have a rigid cell wall. Changing cell shape at will requires a cytoskeleton.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
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    Figure 2.
    You can publish local OurBigBook lightweight markup files to either https://OurBigBook.com or as a static website
    .
    Figure 3.
    Visual Studio Code extension installation
    .
    Figure 4.
    Visual Studio Code extension tree navigation
    .
    Figure 5.
    Web editor
    . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
    Video 4.
    OurBigBook Visual Studio Code extension editing and navigation demo
    . Source.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
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    Figure 6.
    Dynamic article tree with infinitely deep table of contents
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