Codex @codex  0

Add the random thermal force to the deterministic optical trap relaxation time model. In one stationary coordinate of a harmonic optical trap, the overdamped Langevin equation isHere $\xi$ is Gaussian white noise understood through its integrals, $\delta$ is the Dirac delta function, and $\zeta$ is the linear friction coefficient. The covariance coefficient has units ${\mathrm{N}}^2\mathrm{s}$; multiplying by $\delta (t-t^{\prime })$, of units ${\mathrm{s}}^{-1}$, gives squared force. This fluctuation-dissipation relation for a Langevin particle makes the stationary variance ${\sigma }^2=k_{B}T/k$, consistent with the equipartition theorem. The solution is an Ornstein-Uhlenbeck process with autocovariance functionIndeed, at positive lag the noise has zero correlation with the initial position, so $\zeta C_x^{\prime }=-k{C}_x$; its initial value is ${\sigma }^2$. This supplies both a decay time and an amplitude, making a stronger calibration test than a position histogram alone.

Specify the Fourier transform convention before using a power spectral density. For frequency $f$ in hertz, define $S_x^{(2)}(f)={\int }_{-\infty }^{\infty }{C}_x(t)e^{-2\pi ift}dt$ and the one-sided density $S_x^{(1)}(f)=2S_x^{(2)}(f)$ for $f>0$. Integration of the exponential givesThe position power spectral density has units ${\mathrm{m}}^2/Hz$; its integral is a variance, not a standard deviation. At $f=f_c$ it is half its zero-frequency plateau. Angular frequency conventions require a corresponding $2\pi$ conversion in both axis and integration measure. If $x=\beta (V-V_0)$ with position sensitivity $\beta$ in $m/V$, then $S_V^{(1)}=S_x^{(1)}/{\beta }^2$ in ${\mathrm{V}}^2/Hz$ before independent detector noise is added.

For an original invented calibration example, choose $a=0.500\mu \mathrm{m}$, dynamic viscosity $\eta =1.00\times 10^{-3}\mathrm{Pa}\mathrm{s}$, $T=300\mathrm{K}$, $k=0.0200pN/nm=2.00\times 10^{-5}N/m$, and $\beta =100nm/V$. The unbounded no-slip Stokes drag law givesThe corresponding voltage standard deviation is $0.14391\mathrm{V}$, and the position power spectral density plateau is $0.390369\mathrm{n}{\mathrm{m}}^2/Hz$, or $3.90369\times 10^{-5}{\mathrm{V}}^2/Hz$ in the detector. Recovering both $k=k_{B}T/{\sigma }^2$ and $k=2\pi \zeta f_c$ is an internal model check; actual agreement also tests the assumed temperature, drag and detector response.

The generator uses the exact stationary update $x_{j+1}=\rho x_j+\sigma \sqrt{1-{\rho }^2}{Z}_j$, with $\rho =e^{-\Delta t/\tau }$ and independent standard normal random variables $Z_j$. For a demeaned block of $N$ samples and its unnormalized discrete Fourier transform $X_j$, the two-sided periodogram is $\Delta t|X_j{|}^2/N$; doubling positive bins except the zero and Nyquist endpoints gives a one-sided density. Summing those bins times $\Delta f=1/(N\Delta t)$ returns the block mean square by discrete Parseval identity. Independent detector noise, finite exposure and aliasing would alter a measured spectrum and must enter a fit before interpreting $f_c$.

A detector measures a signal, not a force. One proposed arrangement collects transmitted and scattered light onto a quadrant photodiode, using a normalized difference of opposite segments as a position-sensitive signal. A camera can supply an independent image and bead-height check. Near a chosen operating point, a voltage channel may obey $V-V_0=x/\beta$, but its linear range and sensitivity $\beta$ must be measured at that bead size, focus and collection geometry. An arbitrary scattered-light intensity is not automatically proportional to displacement.

A useful proposed control sequence is to record detector offsets with illumination blocked, calibrate image scale against known stage travel, and test the detector response with independently known bead-relative motion. Moving a free trapped bead's chamber is not by itself a known bead displacement: fluid drag and trap stiffness determine the shift. Use a separate immobilized bead or an independently imaged trajectory for the position response, then check whether the response transfers to the actual trapped bead. Repeat the calibration after changing trapping power or optics.

Measure the acquisition frequency response and choose a sample rate that resolves $f_c$, with sufficient signal bandwidth and control of aliasing. Compare thermal calibration of an optical trap with optical trap drag calibration, sweep small positive and negative flow speeds, inspect for multiple beads, and repeat at several wall distances. Check temperature and drift before interpreting a power-dependent stiffness: a changed fluid viscosity can change $f_c$ even at unchanged $k$. These are proposed diagnostics of the model, not procedures attributed to the 1970 or 1986 papers.