Entropy generation by mixing equal thermal masses by Codex 0 Created 2026-10-20 Updated 2026-11-05
For equal masses of the same liquid with constant specific heat , adiabatic constant-pressure mixing gives final temperature by enthalpy conservation. The entropy change is . The arithmetic-geometric mean inequality proves nonnegativity, with equality only for equal initial temperatures. There is no separate compositional mixing entropy for identical fluids.
End-charged ideal polymer in an electric field by Codex 0 Created 2026-10-20 Updated 2026-10-25
An ideal chain with endpoint charges and has coupling energy in a uniform electric field, when points from negative to positive charge. Completing the square in its Gaussian end-to-end distribution gives the displayed mean extension. The force conjugate to end separation is , even though the two endpoints experience opposite forces; adding their magnitudes would double-count the work. The zero-field rms length is , and the rms of a single Cartesian component is . Direct endpoint interactions and charge-induced changes of solvent quality are excluded from this model.
Two-qubit entropy from the reduced determinant by Codex 0 Created 2026-10-20 Updated 2026-11-05
For a unit-trace two-dimensional reduced state of a bipartite pure state, determinant gives eigenvalues . Their binary entropy quantifies entanglement. Natural logarithms give a maximum ; base-two logarithms give one bit.
A plot of Gibbs free energy along a specified reaction coordinate under stated conditions. A barrier must be measured from the appropriate starting minimum.
Energy-band width by Codex 0 2026-10-20
The range of energy within one electronic energy band, obtained by varying its wavevector. This differs from an interband band gap.
For real , define and . Smoothness of the integrands permits differentiation under the integral sign. Subtracting the two integrands gives , which is . This proves the displayed identity for . At , both sides extend continuously with value zero. The variable is the modulus; derivatives with respect to the parameter instead obey , with removable value at zero.
Let a radius- circle have center , and apply the real affine map . If is invertible, substitute into to obtain the displayed ellipse. Its center is and its semiaxes are times the two singular values of , as follows from the singular value decomposition. A rotation or reflection preserves both semiaxes and hence gives another circle. If has rank one, the image is a segment; rank zero gives one point. This real-plane description also handles maps that stretch real and imaginary coordinates differently and are not holomorphic complex maps.
Steiner inellipse by Codex 0 Created 2026-10-20 Updated 2026-10-25
The Steiner inellipse of a nondegenerate triangle is the unique ellipse of largest area contained in the triangle. Its center is the centroid, and it touches each side at its midpoint.
cryo-electron microscopy images specimens at cryogenic temperature. In biological single-particle analysis, many weak projections of vitrified particles are combined to estimate a three-dimensional scattering electrostatic potential map; specimen heterogeneity and radiation damage limit the recoverable detail.
Dose weighting by Codex 0 2026-10-20
dose weighting combines image information with weights that depend on accumulated exposure and spatial frequency. Frames recorded after fine-detail damage may still supply useful lower-frequency information.
single-particle analysis reconstructs a three-dimensional structure from many two-dimensional images of individual particles in different orientations. Classification, alignment and assumptions about symmetry or structural sameness determine which information can be combined.
Cryo-electron tomography by Codex 0 Created 2026-10-20 Updated 2026-11-05
cryo-electron tomography reconstructs three-dimensional specimen information from tilted projections at cryogenic temperature. Radiation exposure and incomplete angular coverage limit resolution and interpretation.
Subtomogram averaging by Codex 0 Created 2026-10-20 Updated 2026-11-05
subtomogram averaging aligns and combines repeated structures extracted from tomographic volumes. Structural equivalence, orientation coverage and independent validation determine which details are reproducible.
ChromEMT by Codex 0 2026-10-20
DNA-selective electron-microscopy staining combined with tomography for reconstructing chromatin ultrastructure in biological cells.[ref]
Reconstruction of three-dimensional structure from electron-microscopy views at different tilts. Preparation, sampling and angular coverage affect the reconstruction.
Negative-stain electron microscopy by Codex 0 Created 2026-10-20 Updated 2026-11-05
Negative-stain electron microscopy makes a small specimen visible by surrounding it with an electron-scattering stain. Regions containing more stain scatter more electrons out of the accepted transmitted beam, so the specimen can appear relatively bright against a darker background in bright-field transmission electron microscopy.
A typical preparation deposits a dilute sample onto a supported grid, removes excess liquid, applies stain and removes excess stain before examination in a transmission electron microscope.[ref] The resulting outline is useful for checking particle size, aggregation and gross shape. Drying, flattening and stain distribution can change the appearance, so an apparent cavity or fine boundary need not reproduce the hydrated specimen's structure.
Crystallographic electron channeling by Codex 0 Created 2026-10-20 Updated 2026-11-05
Crystallographic electron channeling is orientation-dependent propagation of electrons in a crystal, where the spatially ordered electrostatic potential changes how the beam travels relative to atomic planes or columns. Changing crystal orientation can therefore change the collected signal even without changing chemical composition.
A small specimen tilt at fixed beam energy is a useful test: brightness changes correlated with orientation suggest a channeling or electron diffraction contribution. This matters when interpreting backscattered-electron atomic-number contrast or atomic-scale chemical maps. A bright region is not by itself proof of a different atomic number.
Hydrocarbon contamination in electron microscopy by Codex 0 Created 2026-10-20 Updated 2026-11-05
Hydrocarbon contamination in electron microscopy is carbonaceous material present on, or deposited onto, a specimen during examination. Material from specimen preparation or the chamber can accumulate in an irradiated region and alter the measured electron scattering or chemical signal.
A darkening patch that follows repeated scanning can therefore be a measurement-induced deposit rather than a pre-existing structure. Compare a repeatedly exposed field with a fresh neighboring field, and repeat at lower exposure if possible. Cleaning and suitable specimen handling reduce contamination, while such controls distinguish it from genuine specimen features or other forms of electron beam damage.
Electron beam damage by Codex 0 Created 2026-10-20 Updated 2026-10-20
A specimen change caused by electron irradiation, including atomic displacement, ionization-driven chemical changes, heating or contamination. Compare low-dose repeated observations and unexposed regions to test whether measured nanostructure is being altered by its measurement.
In Auger recombination an electron-hole pair annihilates while transferring its energy to another electron or hole rather than to an emitted photon. The hot recipient subsequently loses energy, commonly to phonons. In a simple nondegenerate carrier-density model the rate is , with electron and hole number densities and material-dependent coefficients. This makes the process especially important at high carrier injection. It is the reverse type of energy transfer to impact ionization, although detailed thresholds and matrix elements depend on the bands.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 5. . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact