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In octahedral molecular geometry, six donor directions point toward the vertices of an octahedron. Three mutually cis donors can occupy one face; three coplanar donor directions can occupy a meridian.
In square planar molecular geometry, four donor atoms surround a center in a plane. Two matching ligands can be cis or trans. Low-spin complexes of many late transition metals commonly have this geometry.
Square-pyramidal molecular geometry has four basal donor positions in a square and one axial donor. Removing one axial ligand from an octahedral molecular geometry lowers orbitals with character. A common -level order is , although the middle pair depends on axial strength and distances.
A ring fusion shares two neighboring atoms and their bond between rings. Cis or trans fusion specifies the relative faces of junction substituents; axial/equatorial labels additionally require a conformation.
A molecular geometry in which three attached chemical atoms and their central atom lie in one plane. The ideal symmetric arrangement has three angles and D3h molecular point group symmetry, as in an isolated boron trifluoride molecule.
Interconversion of molecular arrangements that exchanges chemically distinguishable sites. In NMR spectroscopy, exchange fast compared with the relevant frequency difference can merge signals, so observed equivalence need not be a static molecular symmetry.
Measurement of RNA profiles in individual cells. It resolves heterogeneous biological populations, but transcript abundance alone does not prove lineage potential, signalling dependence or new transcription.
Covalent methyl-group modification of DNA, involved in regulation and cellular memory. Its relationship to transcription depends on genomic location and biological context.
Creation of an additional inherited copy of a gene. Copies can be lost, retain shared functions, undergo subfunctionalization, or undergo neofunctionalization; duplication alone does not guarantee a useful novelty.
Origin of a new coding gene from ancestrally non-coding DNA, rather than divergence from a previously coding copy. Failure to detect a distant relative is insufficient evidence: comparative genomic context and evidence of ancestral coding status matter.
site-directed mutagenesis deliberately changes a specified sequence position. Functional interpretation requires distinguishing a local mechanistic effect from altered abundance, localization or protein folding.
Genetic engineering deliberately modifies genetic material or its operation. It includes introducing a sequence, removing a gene or changing regulation with targeted molecular tools. A gene knockout tests consequences of losing functional output, while a modified regulatory sequence can change timing or tissue specificity. Interpretation requires verifying the resulting sequence and expression: delivery of a construct alone does not establish the intended genetic or phenotypic change. [ref]
Molecular Biology of the Cell, 4th edition by Bruce Alberts and others. Chapter 8, Manipulating Proteins, DNA, and RNA
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 2. You can publish local OurBigBook lightweight markup files to either OurBigBook.com or as a static website.Figure 3. Visual Studio Code extension installation.Figure 5. . You can also edit articles on the Web editor without installing anything locally. Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





