This is the level at which human and all extinct siblings lie, with no other extant species, all others were killed or fucked to death: Section "Interbreeding between archaic and modern humans".
Genome:
- 3 Gbps
- 20k genes
- 37.2 trillion cells[ref]
wget ftp://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/annotation/GRCh38_latest/refseq_identifiers/GRCh38_latest_genomic.fna.gz
gunzip --keep GRCh38_latest_genomic.fna.gz
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The key cladograms:
- Hominoidea level for extant species separation
- Australopithecine level for extinct species separation: en.wikipedia.org/w/index.php?title=Homo&oldid=1155900663#Phylogeny
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They actually use fingerprint minutiae, not raw images, which is cool.
Bibliography:
- stackoverflow.com/questions/37147480/convert-fingerprint-bitmap-to-iso-iec-19794-2-template
- stackoverflow.com/questions/33412977/how-to-convert-a-byte-array-of-fingerprint-image-to-iso-19794-2-in-java-basica
- stackoverflow.com/questions/43937986/convert-png-image-fingerprint-to-minutiae-xyt-fingerprint-format
Bibliography:
Possibly not made not possible from userland due to privacy issues. Apparently not even kernelland can see it, only
Bibliography:
- Stack Overflow:
- stackoverflow.com/questions/35934729/capture-fingerprint-from-smartphone-and-save-to-a-file
- stackoverflow.com/questions/63257762/how-to-save-and-compare-2-fingerprints-on-android
- stackoverflow.com/questions/67104186/can-we-use-android-fingerprint-scanner-to-get-finger-pattern-and-store-that-patt
- stackoverflow.com/questions/41632225/android-where-and-how-securely-is-fingerprint-information-stored-in-a-device
- android.stackexchange.com/questions/161780/where-does-android-store-fingerprint-data
- Reddit:
The point of these is that they are good for transfection apparently.
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20k genes, 3 billion base pairs. We can handle this!!!
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This is really cool. Ciro Santilli would be tempted to participate, but his wife is not a fan, in part due to the loss of privacy of children. Maybe she is right...
Someone should implement a version of that where you can upload your privately sequenced genome and get analytics for free.
This was the first large part of the genome that was sequenced, in 1981: Cambridge Reference Sequence. Presumably they picked it because it is short and does not undergo crossover.
About 16.6 kbp:
- 13 coding genes
- 24 non-coding genes
TODO: many places say "exactly" 16,569, it seems that variable number tandem repeat are either rare or don't occur!
- pubmed.ncbi.nlm.nih.gov/2881260/ 1989 reports a single length polymorphism
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By Fred Sanger's group.
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As mentioned by Craig Venter in 100 Greatest Discoveries by the Discovery Channel (2004-2005), the main outcomes of the project were:
- it established the ballpark number of human genes
- showed that human genomes are very similar across individuals.
Important predecessors:
This was one of the first notable country-led large scale sequencing efforts of the world.
Sample paper: www.nature.com/articles/ng.3247
UniProt human: www.uniprot.org/uniprot/Q9BYF1 It is interesting to see in the Mutagenesis how many known mutations can increase or decrease SARS-CoV-2 S protein binding affinity.
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