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An electron donor supplies electrons to an electron acceptor in a redox conversion.

An electron transport chain transfers electrons from an electron donor through electron carriers to a terminal electron acceptor. In the mitochondrial respiratory chain, some transfers drive protons across the inner mitochondrial membrane; their return through ATP synthase can drive ATP formation.^[ref]

The useful separation is between an electron route and a proton route. The former ends in a redox chemical reaction; the latter changes an electrochemical gradient across a membrane. Energy coupling connects them without making electrons and protons interchangeable. An oxygen readout consequently need not be an ATP readout.

This article focuses on the mitochondrial respiratory chain. Bacteria can use other terminal electron acceptors in anaerobic respiration. In chloroplast light-dependent reactions, light supplies energy and linear electron transport connects water oxidation to NADP+ reduction, releasing oxygen. Thus neither oxygen consumption nor the mitochondrial arrangement defines every electron transport chain.^[ref]

The inner mitochondrial membrane separates mitochondrial matrix from intermembrane space. Its selective permeability permits distinct chemical conditions, while embedded mitochondrial respiratory chain proteins and ATP synthase support oxidative phosphorylation. Cristae increase its surface area.^[ref]

A selective boundary and a productive enzyme have different jobs. Even active respiratory enzymes cannot sustain a useful electrochemical gradient if protons return freely across the boundary. Conversely, an intact boundary without an electron donor does not supply the energy for continued pumping. The isolated mitochondria respiration experiment separates some of these dependencies by additions to the same preparation.

NADH supplies two electrons to respiratory complex I, then ubiquinone, respiratory complex III, cytochrome c and cytochrome c oxidase; terminal oxygen reduction forms water. Succinate dehydrogenase, or respiratory complex II, supplies another entry to ubiquinone. Respiratory complex I, respiratory complex III and cytochrome c oxidase move protons outward; respiratory complex II does not.^[ref]

For an original electron balance, supply exactly $6\mu \mathrm{mol}$ of NADH to an ideal preparation with no other electron donor or competing electron acceptor. The donor supplies $12\mu \mathrm{mol}$ of electrons. Complete reduction of one oxygen molecule needs four electrons, so the corresponding oxygen consumption is $3\mu \mathrm{mol}$. Adding the two formal half-reactions makes the result explicit:The cancelling electrons determine the donor-to-oxygen ratio. These chemical equations do not count transmembrane protons or determine an ATP yield. Chemical protons consumed in water formation and transported protons have different roles in the ledger.

One design is an anthracene–methylene–aza-15-crown-5 sensor, with the tertiary amine of the aza-crown linked through $\mathrm{C}{\mathrm{H}}_2$ to anthracene. The crown supplies the sodium-binding oxygen/nitrogen cavity, the amine supplies an electron donor and anthracene supplies the fluorophore. A sufficiently rigid sodium-sized cryptand could improve discrimination further.

Without a bound cation, photoinduced electron transfer from the amine can quench excited anthracene. sodium coordination lowers the electron-donating ability of that lone pair, suppressing this quenching route and increasing fluorescence. The methylene spacer allows electronic communication by electron transfer while limiting direct conjugation between the binding site and fluorophore.

A cavity appropriate to sodium is preferable to an 18-crown-6-like potassium-sized cavity. Selectivity must be tested, not inferred perfectly from cavity size. Potassium binding, including possible sandwich complexes of flexible crowns, can still compete. At the intended concentrations the design should satisfy $K_{\mathrm{Na}}[\mathrm{N}{\mathrm{a}}^{+}]\gg K_{\mathrm{K}}[{\mathrm{K}}^{+}]$ and should give a fluorescence change on sodium binding. Rigidity, cavity size and suppression of competing stoichiometries are useful design controls. fluorescence calibration in the actual potassium-containing solvent establishes the usable detection range.