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Occupying an antibonding molecular orbital opposes a chemical bond. For equivalent $1s$ atomic orbitals of the hydrogen atom, the difference ${\sigma }_u^{\ast }={\sigma }_{-}$ vanishes on the plane halfway between the protons: every point there is equally far from both centres, so the amplitudes cancel. This nodal plane removes the contribution of this molecular orbital to electron density on that plane; it does not make an entire finite region empty. The $1s$-derived antibonding molecular orbital lies above its bonding molecular orbital partner in energy. See Field, MIT 5.61, lecture 25, pp. 1–2.

In the ${\mathrm{He}}_2$ minimal model, $({\sigma }_u^{\ast }{)}^2$ adds $N_a=2$ and cancels the bond order contribution of $({\sigma }_g{)}^2$. Opposite signs on the two lobes describe probability amplitudes, while both lobes have nonnegative probability density after squaring. The star is an orbital label, not an extra electron or an electric charge.

An atomic orbital is a one-electron spatial wavefunction used to describe an electron's state in a chemical atom. For a one-electron hydrogen atom, orbitals can be exact energy eigenstates; descriptions of many-electron atoms instead use an orbital approximation. A normalized atomic orbital has $\int |\varphi {|}^2{d}^3\mathbf{r}=1$, and the Born rule gives the position probability density $|\varphi {|}^2$. It is a function extending through space, not a prescribed classical orbit. ^[ref]

The linear combination of atomic orbitals combines these single-centre functions to approximate a molecular orbital. The orbital overlap measures their inner product, and their relative quantum phase controls the interference shown in molecular orbital theory.

Alternation between shorter and longer chemical bonds along a conjugated system. In the Hückel method, unequal nearest-neighbour couplings split the frontier molecular orbitals. An electronic energy gain must be compared at a stated constraint on the mean coupling and against the geometric distortion cost.

Here butadiene denotes the 1,3-butadiene molecule, with formula ${\mathrm{C}}_4{\mathrm{H}}_6$. It supplies a concrete ultraviolet absorption example: a photon can promote an electron between molecular orbitals with the appropriate energy separation. ^[ref].

With one orthonormal site orbital per cube vertex, common site energy $\alpha$, and coupling $\beta$ along every edge, the one-electron Hamiltonian is $\alpha I+\beta A$, where $A$ is the cube adjacency matrix. Its eigenvalues are $\alpha +3\beta ,\alpha +\beta ,\alpha -\beta ,\alpha -3\beta$ with multiplicities $1,3,3,1$.

One proof labels each vertex by three signs. The adjacency operator flips one sign at a time, so a product of $k$ coordinate signs is an eigenfunction of $A$ with eigenvalue $3-2k$. There are $\left(\genfrac{}{}{0ex}{}{3}{k}\right)$ such products. For $\beta <0$, eight electrons fill the lowest four spatial molecular orbitals, yielding total one-electron energy $8\alpha +12\beta$.

A molecular orbital near the boundary between occupied and unoccupied levels. The highest occupied molecular orbital and LUMO are central examples. Their energies, occupancies, spatial form and symmetry help predict which new chemical bonds can form when fragments approach.

A very weakly bound van der Waals molecule, observed in cold helium expansions. The absence of an ordinary covalent bond in the elementary molecular orbital model must not be confused with absence of every possible bound dimer.^[ref]

The occupied molecular orbital of greatest energy in a specified reference electron configuration. A fixed-orbital model removes an electron from this level first; relaxation and electron correlation can modify the resulting energy.

A model of conjugated $\pi$ molecular orbitals with an orthonormal atomic basis, one-centre energies ${\alpha }_i$, and resonance matrix elements ${\beta }_{ij}$ between selected neighbouring sites. Solving $H\mathbf{c}=E\mathbf{c}$ gives orbital energies and coefficients. Its simplicity makes symmetry and electron filling explicit, but quantitative charge predictions can depend strongly on the chosen parameters and omitted orbital relaxation.

In an orthonormal Hückel method basis, an occupied molecular orbital with occupancy $f_k$ contributes $f_k|c_{ik}{|}^2$ electrons to site $i$. Adding one electron to a fixed orbital changes the site population by $|c_i{|}^2$. A coefficient sign indicates orbital phase, not charge sign. A net atomic charge also needs a reference population and treatment of the electrons outside the model.

The LCAO approximation builds a molecular orbital as a linear combination of single-centre atomic orbitals. For two equivalent normalized real $1s$ functions ${\varphi }_A$ and ${\varphi }_B$, choose their signs positive and define their orbital overlap $S$. At nonzero separation, $0<S<1$, and the normalized combinations areHere ${\sigma }_{+}={\sigma }_g$ and ${\sigma }_{-}={\sigma }_u^{\ast }$. Equal coefficients use the equivalence of the two centres; a general LCAO need not have equal coefficients. See Field, MIT 5.61, lecture 24, pp. 3–6: LCAO coefficients and overlap integrals.

For the Gaussian function toy's $a=1$, the two denominators are $\sqrt{2(1+S)}\approx 1.654013$ and $\sqrt{2(1-S)}\approx 1.124385$. To check wavefunction normalization, expand the square: $\int ({\varphi }_A\pm {\varphi }_B{)}^2=1+1\pm 2S$. Dividing by $2(1\pm S)$ gives one. The local probability density isThe cross term is the interference; adding the separate densities first would lose it. These formulas normalize the chosen linear combination exactly, while the restricted choice of atomic orbitals remains an approximation to an actual molecular orbital.

The neutral molecule Li-two. In the elementary valence molecular orbital description, its two valence electrons occupy the bonding sigma-two-s orbital, giving bond order one and a closed-shell ground state.

A lone pair is an electron pair assigned to one chemical atom without a connecting line to another chemical atom in a Lewis structure. It is usually shown as two dots. Water has two lone pairs on oxygen, accounting for four valence electrons; Ammonia has one lone pair on nitrogen, accounting for two. In $\mathrm{O}=\mathrm{C}=\mathrm{O}$, each oxygen has two lone pairs, and carbon has none.

A lone pair can be reactive. In protonation of Ammonia, the nitrogen lone pair becomes a new bond pair to a proton:The proton supplies no electron, so the eight valence electrons are retained: three bond pairs plus one lone pair become four bond pairs. The resulting nitrogen has formal charge $5-0-8/2=+1$; each hydrogen has formal charge zero. This is why identifying an available lone pair helps explain the chemical base behaviour of Ammonia, rather than merely decorating its formula.

Lewis already used the Ammonia to ${\mathrm{NH}}_4^{+}$ example in The Atom and the Molecule (1916), pp. 777–778. In modern terms the dots identify an allocation of electrons, not two stationary particles or an isolated patch unaffected by the rest of the molecule. A molecular orbital description can spread electronic amplitude over several chemical atoms while a localized Lewis structure remains useful for acid-base chemistry.

A molecular orbital is a one-electron spatial wavefunction for the combined atomic nuclei of a molecule. For a normalized molecular orbital, the Born rule gives the position probability density $|\psi (\mathbf{r}){|}^2$, with ${\int }_{{\mathbb{R}}^3}|\psi {|}^2{d}^3\mathbf{r}=1$. The molecular orbital is the amplitude, rather than its squared modulus or a classical trajectory.

In the independent-orbital approximation, a doubly occupied molecular orbital contributes $2|\psi {|}^2$ to the electron number density, whose integral is two. An empty molecular orbital contributes zero, even though its shape is still part of the model. The molecular hydrogen example therefore uses one occupied spatial molecular orbital for two electrons, distinguished by their spins. A negative real probability amplitude means a relative quantum phase of $\pi$, not positive electric charge; multiplying the whole wavefunction by $-1$ changes only its global phase.

Molecular orbital theory describes the electronic arrangement of a molecule using molecular orbitals: one-electron spatial wavefunctions extending over the combined atomic nuclei. Filling bonding molecular orbitals can stabilize a chemical bond; filling antibonding molecular orbitals opposes that stabilization. A molecular orbital is a building block of a many-electron description, rather than the entire many-electron wavefunction. See Robert W. Field, MIT 5.61, lecture 24, pp. 1–4: molecular orbitals and the LCAO approximation.

First make the interference visible with an exactly normalized one-dimensional toy. Replace the three-dimensional $1s$ atomic orbitals of the hydrogen atom by two Gaussian functions centred at $x=\pm a$, with dimensionless $x$ and $a>0$:The normalized sum and difference are ${\psi }_{\pm }=({\varphi }_A\pm {\varphi }_B)/\sqrt{2(1\pm S)}$, following the same linear combination of atomic orbitals algebra. At $a=1$, the orbital overlap is $S=e^{-1}\approx 0.367879$. At the midpoint, ${\varphi }_A(0)={\varphi }_B(0)\approx 0.455581$, givingBoth probability densities have total integral one: interference redistributes probability, rather than creating an extra electron. These are toy wavefunctions, not actual hydrogen atom orbitals or predictions of molecular hydrogen energies.

Now fill the two $1s$-derived molecular orbitals in the minimal model. The lower bonding molecular orbital is labelled ${\sigma }_g$; the upper antibonding molecular orbital is ${\sigma }_u^{\ast }$. The Pauli exclusion principle permits at most two electrons in each spatial molecular orbital, with opposite spin projections along a chosen axis. For the lowest electron configuration in this model, fill ${\sigma }_g$ first. The subscripts $g$ and $u$ denote even and odd behaviour under inversion through the midpoint; the star marks an antibonding molecular orbital. See Flowers et al., Chemistry 2e, 8.4: occupancy and bond order and Field, MIT 5.61, lecture 25, pp. 1–3: bonding, antibonding, and symmetry labels.

With $N_b$ electrons in bonding molecular orbitals and $N_a$ in antibonding molecular orbitals, the model's bond order is $b=(N_b-N_a)/2$. The three elementary counts are:

The zero bond order says this minimal model gives no net covalent bond for ${\mathrm{He}}_2$. It does not rule out every bound pair of helium chemical atoms: a very weak Van der Waals force can bind a neutral helium dimer, which has been observed experimentally. See Zeller et al., Imaging the He2 quantum halo state using a free electron laser, PNAS 113, 14651–14655 (2016), p. 14651: van der Waals binding and Luo et al., The weakest bond: Experimental observation of helium dimer, Journal of Chemical Physics 98, 3564–3567 (1993). The bond order count does not include that weak binding mechanism.

The useful surprise is that sharing alone does not determine a chemical bond: the relative quantum phase and the occupancy matter together. The same two shapes explain why adding an electron to a bonding molecular orbital increases the model's bond order, while adding one to an antibonding molecular orbital decreases it. Molecular orbital theory also accounts for the unpaired electrons and paramagnetism of molecular oxygen, which its all-paired Lewis structure misses. See Chemistry 2e, 8.4: the molecular orbital description of oxygen.

A molecular orbital whose occupation changes bonding between the selected centres relatively little. In a real complex, weak bonding or antibonding contributions may replace exact nonbonding character.

A molecular orbital with little or no net bonding interaction between the atoms in the stated orbital model. A symmetry-isolated atomic orbital can be exactly nonbonding in a minimal basis: the out-of-plane nitrogen $2p_z$ orbital in planar Ammonia has no matching hydrogen symmetry orbital. A mainly localized lone pair can acquire bonding admixture when a distortion permits additional mixing.

The hydrogen $A_1$ symmetry orbital mixes with both nitrogen $2s$ and $2p_z$, giving three $a_1$ molecular orbitals. The two hydrogen $E$ functions mix with $(2p_x,2p_y)$, giving a bonding $e$ pair and an antibonding $e$ pair. Eight valence electrons fill the lower levels asThis uses conventional numbering that reserves $1a_1$ for the omitted nitrogen core $1s$ orbital. The low $2a_1$ and $1e$ levels provide the principal N–H bonding molecular orbitals; the highest occupied $3a_1$ level is the mainly nitrogen lone pair, with some bonding admixture permitted by the pyramidal geometry. Empty $4a_1$ and $2e$ levels are antibonding. Symmetry fixes which orbitals can mix, rather than their quantitative energy separations.

The nitrogen-centered highest occupied molecular orbital of Ammonia supplies a lone pair; planar borane has an empty out-of-plane $p$-derived lowest unoccupied molecular orbital. Approach along this acceptor axis gives constructive orbital overlap and donation of the nitrogen pair into the boron-centered acceptor. The resulting N-to-B coordinate covalent bond forms the ammonia borane adduct.

The occupied molecular orbital formed by this interaction is bonding, while the corresponding antibonding combination remains empty. Borane pyramidalizes as coordination increases from three to four. Ammonia can use its existing outward-pointing lone pair; its inversion to the planar transition geometry is not a prerequisite. The Lewis base and Lewis acid descriptions summarize the donor and acceptor roles, while the frontier molecular orbitals explain their directional interaction.

A symmetry orbital is a molecular orbital when it is also an eigenfunction of the effective one-electron Hamiltonian operator. If an irreducible representation occurs once in a complete invariant model space, a symmetry-invariant Hamiltonian acts as a scalar on that copy by Schur's lemma. Its basis functions are then degenerate eigenfunctions. When the same symmetry occurs in several copies, those copies can mix; one must diagonalize the corresponding block. Merely having a one-dimensional symmetry label is insufficient if other orbitals have that same label.