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To determine a crystal structure, scatter probes whose wavelength is comparable to atomic spacings, typically $0.1\mathrm{nm}$. X-ray diffraction, neutron diffraction and electron diffraction probe periodic order through coherent elastic scattering. With incident and outgoing wavevectors ${\mathbf{k}}_i,{\mathbf{k}}_f$, define $\mathbf{Q}={\mathbf{k}}_i-{\mathbf{k}}_f$. Elastic scattering has $|{\mathbf{k}}_i|=|{\mathbf{k}}_f|$ and constructive interference occurs when $\mathbf{Q}=\mathbf{G}$, a reciprocal lattice vector. The equivalent Bragg's law iswhere the detector scattering angle is $2\theta$, not $\theta$. Peak positions reveal plane spacings and the unit cell; systematic absent reflections constrain centring and the atomic basis.

For X-ray diffraction, a laboratory tube or a synchrotron supplies a collimated beam. In a monochromatic single-crystal experiment a goniometer rotates the specimen and an area detector records reflection positions and integrated wave intensities. A powder experiment uses many randomly oriented crystallites; the reflections form cones recorded as rings or peaks versus $2\theta$, permitting indexing and determination of lattice constants without selecting one crystallite. For a cubic cell, for example, $d_{hkl}=a/\sqrt{h^2+k^2+l^2}$. The white-beam Laue method is especially useful for crystal orientation.

The crystal basis structure factor isafter geometric and thermal corrections, including the Debye–Waller factor. For X-rays, $f_j$ describes scattering from the atomic electron density. Thus positions provide lattice geometry while relative wave intensities constrain atomic positions and species. Wave intensities do not directly give the phases of $F_{\mathbf{G}}$: structure refinement or other constraints must address the phase problem.

Neutron diffraction uses a reactor or spallation source, wavelength selection and a detector bank or time-of-flight detection. Neutrons interact with nuclei through nuclear scattering lengths that vary between elements and isotopes rather than simply with atomic number. This makes them useful for light atoms, isotope contrast and distinguishing some neighbours in the periodic table; their magnetic interaction also probes magnetic order. Electron diffraction in a transmission electron microscope gives strong signals from very small thin crystallites, although strong multiple scattering often complicates quantitative wave intensity analysis. These techniques complement one another.

A phonon dispersion relation requires both momentum and energy transfer, so elastic diffraction alone is insufficient. In coherent inelastic neutron scattering, the measured transfers for phonon creation areHere $\mathbf{q}$ is the phonon wavevector reduced into a Brillouin zone, and $s$ labels an acoustic phonon branch or optical phonon branch. Negative energy transfer corresponds to annihilating an already occupied phonon. For neutrons $E={\hslash }^2{k}^2/(2m_n)$, so wavelength and energy selection are linked. Typical thermal-neutron energies of a few to tens of millielectronvolts ($1\mathrm{meV}=10^{-3}$ electronvolts) are well matched to many lattice vibrations.

A triple-axis spectrometer uses a monochromator crystal to select ${\mathbf{k}}_i$, the sample as the second scattering axis, and an analyser crystal to select ${\mathbf{k}}_f$ before detection. Rotate these elements and the specimen to hold $\mathbf{Q}$ fixed while scanning $E_i-E_f$; inelastic peaks locate ${\omega }_s(\mathbf{q})$. Repeat at different $\mathbf{q}$ along symmetry directions to map the phonon dispersion relation. The dynamic structure factor governs peak weights, including the selection of phonon polarization by the scattering geometry. A time-of-flight spectrometer instead infers outgoing neutron energy from travel time over a known flight path and records many directions simultaneously.

Inelastic X-ray scattering can also resolve phonons when very high energy resolution is available. Optical Raman scattering and Brillouin scattering measure vibrations near the zone centre because photon momentum transfers are small compared with a typical reciprocal lattice spacing; they complement, rather than generally map the entire zone like, momentum-resolved neutron measurements. Ultrasound measurements give the long-wavelength sound speed, the initial slope $d\omega /dq$ of an acoustic phonon branch.

The phase problem is the loss of the wave phases of the crystal basis structure factors when an experiment records their squared magnitudes. Write $F_{hkl}=|F_{hkl}|e^{i{\varphi }_{hkl}}$. A Fourier series reconstruction of a periodic electron density uses both $|F_{hkl}|$ and ${\varphi }_{hkl}$, whereas an ordinary wave intensity measurement supplies only $|F_{hkl}{|}^2$. Estimating the missing phases therefore needs additional constraints or measurements.^[ref]

There is also an unavoidable choice of origin. Translating all motif positions by the same fractional crystal coordinate vector $t$ multiplies $F_{hkl}$ by $e^{2\pi i(h,k,l)\cdot t}$ without changing $|F_{hkl}{|}^2$. The physical arrangement is unchanged. A reconstructed coordinate list must therefore distinguish a coordinate convention from information actually recovered from the measurements.

X-ray crystallographic structure inference is an inverse problem: infer a crystal structure from measured X-ray diffraction. A proposed unit cell and atomic basis of a crystal predict a pattern; structure determination asks which proposals survive comparison with that pattern. The useful separation is between directions and strengths. Peak positions constrain the reciprocal lattice and hence interplanar spacings; relative wave intensities constrain the motif through the crystal basis structure factor. Knowing a repeat distance does not locate all the chemical atoms within that repeat.

The lattice constant from two indexed reflections example isolates the geometric inference. Basis intensities and phase ambiguity then holds the translations fixed while changing the motif. Even complete, noiseless wave intensity data need not determine all wave phases: this is the phase problem. Chemical composition, symmetry, and additional measurements can supply constraints beyond the original pattern.^[ref]