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For the carboxylic acid-derived examples here, an acyl group is the group remaining after formal removal of $\mathrm{OH}$ from $\mathrm{R}-\mathrm{C}(=\mathrm{O})-\mathrm{OH}$. It includes the oxygen at the end of the fatty acid-derived chain, so it is more than just a hydrocarbon region. See IUPAC class names: carboxylic acids and derivatives.

An acyclic saturated hydrocarbon. The formula applies to a connected neutral alkane with $n\ge 1$ carbon atoms.

A conjugated hydrocarbon whose pi-site graph is bipartite: its sites can be divided into two sets with every retained resonance interaction joining opposite sets. The definition refers to the selected nearest-neighbour Hückel model, not simply to a visually alternating Lewis drawing.

A cationic surfactant with a sixteen-carbon hydrocarbon tail and a positively charged trimethylammonium head group, accompanied by a ${\mathrm{Br}}^{-}$ counterion. It is an amphiphile that can form aqueous micelles. Its head-group charge has the opposite sign to that of sodium dodecyl sulfate.

A fatty acid is a carboxylic acid with a hydrocarbon chain. Its chain supplies much of the hydrophobic region when incorporated into a triglyceride or typical glycerophospholipid. See Biology 2e: fatty acids.

The conjugated hydrocarbon with a five-membered ring bearing two endocyclic double bonds and one exocyclic methylene double bond. Its ideal planar structure has the C2v molecular point group.

Glycerol has three carbon chemical atoms and three $\mathrm{OH}$ groups. It supplies the scaffold of triglycerides and glycerophospholipids, but is not itself a long hydrocarbon chain. See Biology 2e: glycerol.

The hydrocarbon $\mathrm{HC}\equiv \mathrm{C}-\mathrm{C}{\mathrm{H}}_2-\mathrm{C}{\mathrm{H}}_2-\mathrm{C}\equiv \mathrm{CH}$. Its triple-bond fragments are linear, but the entire carbon skeleton need not be. The extended anti conformation has an inversion centre at the central bond midpoint and belongs to the C2h molecular point group.

A hydrocarbon contains only carbon and hydrogen. A fatty acid also contains oxygen; calling its long chain a hydrocarbon region does not make the whole fatty acid a hydrocarbon. See IUPAC Gold Book: hydrocarbons.

The hydrophobic effect is the solvent-mediated tendency of nonpolar regions to associate in water. Exposing a hydrocarbon region changes how surrounding water molecules can arrange and interact; reducing that exposure can lower the total free energy. Both water and lipids enter the accounting. The effect is not an additional covalent bond between chains. See IUPAC Gold Book: hydrophobic interaction.

At fixed temperature and pressure, compare two candidate organizations by the change in Gibbs free energy, $\Delta G=\Delta H-T\Delta S$, where $H$ is enthalpy, $T$ is absolute temperature, and $S$ is entropy. An organization with lower $G$ is favored in this comparison. Reducing exposed hydrocarbon area is one contribution; changes in chain packing and the entropy of the lipids also matter. This explains why hydrophobicity alone cannot predict every aggregate shape. See 16.4 Free Energy.

Hydrophobicity describes unfavorable mixing with water, as illustrated by long hydrocarbon regions. The hydrophobic regions of membrane-forming phospholipids face the interior of a lipid bilayer. This organization is explained by the hydrophobic effect, rather than by imagining that chains actively repel water. See IUPAC Gold Book: hydrophobic interaction.

Transfer is favourable when new water–solute interactions compensate the cavity and reorganization costs of accommodating the solute. The Gibbs energy also includes the loss of solute–alkane interactions; it is not simply a count of hydrogen bonds. isobutane cannot compensate those costs with strong directional interactions, explaining its positive transfer Gibbs energy. acetone and both amines can accept hydrogen bonds from water and have favourable electrostatic solvation, making their transfer moderately favourable. isopropylamine can additionally donate to water, consistent with a somewhat greater preference for water than trimethylamine.

acetamide combines a strong carbonyl acceptor with N–H donors and has the most favourable hydration in the group, accounting for its much more negative transfer Gibbs energy. Its pure solid lattice is not an extra sublimation penalty to insert here: the stated process starts from a dilute alkane solution and ends in dilute water, rather than dissolving the pure crystal. The nonmonotonic relationship between hydrogen-bond acceptor parameter and transfer Gibbs energy is expected because donor strength, nonpolar surface, solvent cavity formation, and all other solvation contributions also enter.

For matched standard states, $\Delta G_{\mathrm{tr}}^{\circ }=-RT\ln K_{\mathrm{tr}}$, with $K_{\mathrm{tr}}$ the water-to-alkane activity ratio. As an illustrative 298 K calculation, the hydrocarbon value implies $K_{\mathrm{tr}}\simeq 7.0\times 10^{-4}$, whereas the amide value implies approximately $3.6\times 10^4$. These are standard-state partition preferences, not absolute aqueous solubilities. amine protonation could introduce an additional pH-dependent contribution to an experimentally measured distribution coefficient, but no such speciation information is supplied and it is not needed for the molecular comparison.

The acceptor-strength trend is amide oxygen and amine nitrogen strongest, ketone oxygen weaker, hydrocarbon essentially nonaccepting. trimethylamine and isopropylamine each provide a relatively available nitrogen lone pair; adding N–H bonds changes donor ability much more conspicuously than it changes the acceptor ranking in this comparison. Alkyl substitution and solvation modify the precise values, so the matching amine parameters should be read as the stated empirical strengths rather than a universal equality of all amines.

In acetamide, nitrogen lone-pair donation contributes an ${\mathrm{O}}^{-}-\mathrm{C}={\mathrm{N}}^{+}$ form contributing to resonance in chemistry, increasing electron density at oxygen and making it a strong hydrogen bond acceptor. The amide acceptor is oxygen, not nitrogen: the nitrogen lone pair is delocalized into the carbonyl. acetone also accepts at oxygen, but lacks this nitrogen-to-carbonyl donation and has the smaller hydrogen-bond acceptor parameter. isobutane has neither a heteroatom lone pair nor a comparable acceptor site; its zero value is consistent with the absence of an ordinary directional hydrogen bond acceptor.

Purified coal gas is mainly molecular hydrogen, methane and carbon monoxide, with smaller quantities of other hydrocarbons and diluent gases. It is made by heating coal in retorts with little or no admitted air, not by completely burning the coal.

The hot products include permanent gases, condensable organic vapours and water vapour, leaving coke in the retort. Cooling removes much of the coal tar and condenses water, which captures Ammonia as ammoniacal liquor. Further washing and purification remove much of the remaining Ammonia, hydrogen sulfide and other objectionable constituents before the gas is distributed. A crude retort product and purified household coal gas therefore have different compositions.

Molecular hydrogen is commonly the largest component by volume. Methane is another major combustible constituent, while carbon monoxide contributes fuel value and serious toxicity. Ethylene and other unsaturated hydrocarbons, together with vapours such as benzene, contribute strongly to the luminous flame. Their thermal breakdown can produce incandescent soot, explaining why a small fraction of heavier hydrocarbons can disproportionately affect lighting quality. Smaller or variable quantities of carbon dioxide and molecular nitrogen dilute the combustible mixture. Molecular oxygen is not an intended major constituent; air ingress can change the mixture.

There is no single balanced chemical equation for making coal gas: coal is a complex feed and produces many products simultaneously. Nor is one exact percentage composition universal; it depends on the coal, retort temperature, operating conditions and purification. The main distinction is between the light combustible gases, the smaller illuminating hydrocarbon fraction, and contaminants or diluents. Modern natural gas, usually rich in methane, should not be used as a synonym for historical coal gas.

The wick supplies liquid wax by capillary action; wax vapour reacts with atmospheric oxygen, releasing the heat that keeps the supply going. The wick is a delivery system, rather than the principal fuel.

First, an external flame warms the wick and adjacent wax. Melting produces a small liquid reservoir, and capillary action draws it into the spaces between the wick fibres. Near the hot tip, evaporation and some pyrolysis supply gaseous fuel. Melting and evaporation are physical changes; pyrolysis and combustion change the chemical substances present. Once established, the candle flame transfers enough heat back to the wax to maintain this sequence.^[ref]

The candle flame is a diffusion flame. Its relatively dark inner region contains newly supplied fuel with limited access to oxygen. In the yellow luminous region, incomplete conversion of the hydrocarbons produces small soot particles, which become incandescent. Farther out, mixing supplies enough oxygen to consume most of the remaining fuel, carbon monoxide and soot. Thus the yellow light is largely thermal emission from hot particles, rather than a yellow gas.^[ref]

For a representative alkane component of paraffin wax, complete combustion has the chemical equationReal candle materials are mixtures, and some, such as fatty materials, already contain oxygen; the displayed chemical equation is an illustrative wax model. The principal products of complete combustion are carbon dioxide and water vapour. Convection carries the hot gases upward and brings fresh air into the flame. A cold collector can reveal condensed water; collecting the gases and passing them into limewater gives a calcium carbonate cloudiness from carbon dioxide.

Removing the oxygen supply, cooling the reaction zone, or cutting off wax delivery extinguishes the flame. The smoking wick immediately afterwards can still emit combustible vapour; without sufficient heat at the mixing zone, that vapour need not sustain a flame.

An amphiphile has a solvent-affine part and a solvent-averse part within one molecule. In water these are commonly called hydrophilic head and hydrophobic tail. Two nonbiological examples are sodium dodecyl sulfate, with a twelve-carbon tail and an anionic sulfate head, and cetyltrimethylammonium bromide, with a sixteen-carbon tail and a cationic quaternary-ammonium head. Their counterions balance the ionic head-group charge; the head and tail do not have interchangeable interactions with water.

Aggregation reduces unfavorable exposure of hydrocarbon tails to water but loses molecular translational entropy. Interfacial free energy, head-group solvation and electrostatic repulsion, chain packing and conformational entropy determine the preferred aggregate. The hydrophobic effect is a solvent-mediated free-energy balance, rather than a literal attractive bond between tails.

The amphiphile packing parametercompares tail volume $v$, effective head-group area $a_0$ and maximum tail length ${\ell }_c$. A spherical core of radius $R$ obeys $v/a_0=R/3$, and a long cylindrical core obeys $v/a_0=R/2$. The condition $R\le {\ell }_c$ gives the conventional spherical window $P\lesssim 1/3$ and cylindrical window $1/3\lesssim P\lesssim 1/2$. Less strongly curved bilayers become compatible for $1/2\lesssim P\lesssim 1$, with planar packing near one; values above one can favor inverse curvature in an appropriate nonpolar surrounding medium. These windows are geometric guides rather than exact phase boundaries.

A larger hydrated or electrostatically repelling head increases $a_0$ and favors positive curvature. Screening of charged heads or a smaller head can lower $a_0$ and favor rods or sheets. Multiple tails increase the tail volume relative to head area and can favor bilayers. Tail length, branching, temperature and solvent selectivity alter both geometry and interaction free energy, so one cannot predict a unique aggregate from hydrophobicity alone.^[ref]

In the supplied chemical-potential expression, $\mu$ is the equilibrium chemical potential per amphiphile, ${\mu }_{\alpha }^0$ the standard free energy per amphiphile within an aggregate of size $\alpha$, and $x_{\alpha }$ the dimensionless molecular fraction belonging to that size class. The aggregate molecular fraction versus aggregate number fraction distinction explains the logarithm: the aggregate count fraction is $x_{\alpha }/\alpha$, and dividing its translational chemical potential by $\alpha$ gives a per-molecule value. ThusHere $k_B$ is the Boltzmann constant, $T$ absolute temperature, and $\alpha$ a positive integer. The logarithm acts on a dimensionless ideal activity; a concentrated nonideal solution would require activity coefficients.

equilibrium exchange of amphiphiles gives the same per-molecule $\mu$ for every size. For monomers, $\mu ={\mu }_1^0+k_{B}T\ln x_1$. Substitution yields the finite-micelle aggregation-number distributionThis formula by itself does not prescribe a preferred micelle size: the size dependence of ${\mu }_{\alpha }^0$ must include the competing packing and interaction terms. If their balance favors a finite size ${\alpha }_{\ast }$, a monomer population and a peak around that size can coexist. Dividing by $\alpha$ would instead plot the distribution of aggregate counts.

At very low $x_{\mathrm{tot}}$, the factors $x_1^{\alpha }$ suppress large aggregates and most molecules remain monomers. As $x_1$ rises, a favorable aggregate class grows extremely rapidly because of this high power. The critical micelle concentration from standard chemical potentials has the large-size estimateMore precisely, the illustrative crossover condition $x_{{\alpha }_{\ast }}=x_1$ givesAdded material above the crossover enters aggregates predominantly. Monomer concentration then increases slowly rather than being exactly pinned: its logarithm enters $\mu$, while aggregate populations respond with a large factor ${\alpha }_{\ast }$. For finite micelles this is a sharp association crossover, not an absolute prohibition on aggregates below one exact concentration.

The drawing uses a declared illustrative standard-free-energy model favoring aggregates near $\alpha =40$. It is not an inferred distribution or critical concentration for either named surfactant. The separate monomer peak is at $\alpha =1$; a distribution of molecular fractions weights each aggregate by its number of molecules.

For the general physics of a nearly planar fluid sheet, let $h(x,y)$ be a small-slope displacement, $\kappa$ membrane bending rigidity and $\sigma$ mechanical tension. At fixed topology and symmetric reference curvature, the quadratic Helfrich energy isThe bending term is the small-slope curvature-elastic energy; additional spontaneous-curvature or boundary terms require extra information.^[ref]

For Fourier amplitudes $h_{\mathbf{q}}=A^{-1}{\int }_{A}h(\mathbf{x})e^{-i\mathbf{q}\cdot \mathbf{x}}{d}^{2}x$, equipartition gives the membrane fluctuation spectrum under tension,Higher temperature increases fluctuations, while greater membrane bending rigidity or tension suppresses them. Short-wavelength modes are predominantly bending-controlled; longer wavelengths can be tension-controlled. Finite sheet size, supports, confinement and imposed area set boundary conditions and infrared cutoffs; continuum elasticity also needs a short-distance cutoff. solvent viscosity affects relaxation rates, although it does not enter this equilibrium amplitude at fixed elastic parameters.

TODO: user-deferred biology. The requested importance of these fluctuations for bodily function is deferred. The preceding result covers only the independent continuum and thermal physics.

Phospholipids are lipids containing a phosphate group as part of their structure linked by covalent bonds. The familiar membrane-forming phospholipids are amphiphilic: a hydrophilic head region with chemical polarity coexists with a hydrophobic, largely nonpolar hydrocarbon region. These descriptions refer to different parts of the same molecule, not to two separate substances. See IUPAC Gold Book: phospholipids and IUPAC Gold Book: amphiphilic.

A typical two-chain glycerophospholipid provides a useful example: a glycerol scaffold carries two fatty acid-derived acyl groups through ester linkages, plus a phosphate-containing head region. Phosphatidylcholine is one example. This scaffold describes an important subclass, rather than all phospholipids: sphingomyelin has a different backbone, and even glycerophospholipids need not all have two acyl groups. See IUPAC–IUB, Nomenclature of Lipids (1976), Lip-1.5 and Lip-2.1–2.6.

Polar does not mean negatively charged overall. At near-neutral pH, phosphatidylcholine is zwitterionic: its phosphate region carries negative electric charge and its choline region positive electric charge, with zero net electric charge for the molecule. Counting those opposite charges gives $(-1)+(+1)=0$; it does not remove their local interactions with water. See Lodish et al., Molecular Cell Biology: membrane lipids.

In a lipid bilayer, two membrane leaflets orient their hydrophilic heads toward the water on either side and their hydrophobic chains toward the shared interior. The hydrophobic effect helps explain this organization through the free energy of the water and lipids together. It is not a special repulsive chemical bond between chains and water. Which organization is favored also depends on molecular geometry, temperature, concentration, and the surrounding chemical solution; a phospholipid label alone does not guarantee a lipid bilayer. See Alberts et al., Molecular Biology of the Cell: the lipid bilayer.

This organization supplies a flexible barrier for compartments. A fluid lipid bilayer allows lipids to undergo diffusion within each membrane leaflet; barrier function therefore coexists with motion of molecules, as in the fluid mosaic model. It is not completely impermeable: small nonpolar molecules such as molecular oxygen and carbon dioxide cross much more readily than ions. In a cell membrane, ion channels and other membrane transport proteins provide selective routes; the existing membrane transport article explains their driving forces. See Alberts et al.: principles of membrane transport.

In 1925, E. Gorter and F. Grendel extracted lipids from red blood cells and compared the surface area of a one-molecule-thick film on water with the estimated total surface area of the red blood cells. Their table gave ratios near two, supporting a two-layer covering; they also proposed heads facing the aqueous surroundings on both sides. The inference depends on recovering the relevant lipids, estimating the red blood cell surface area correctly, and comparing compatible packing in the film and the cell membrane. It was indirect evidence, not an image of the lipid bilayer. The paper itself notes possible losses during evaporation. See Gorter and Grendel, On Bimolecular Layers of Lipoids on the Chromocytes of the Blood, Journal of Experimental Medicine 41 (1925), 439–443.

A triglyceride contains three ester linkages joining glycerol to fatty acid-derived acyl groups. Complete saponification therefore consumes three hydroxide equivalents per triglyceride, yielding one glycerol and three fatty acid carboxylates.^[ref]

Writing the three hydrocarbon groups separately allows their compositions to differ:This is the preceding ester chemical equation applied three times: each linkage supplies one carboxylate, and each formerly esterified oxygen on the glycerol scaffold gains one hydrogen. The two sides retain the same three ${\mathrm{R}}_i$ groups and have net electric charge $-3$.

Soap consists of sodium or potassium salts of long-chain fatty acids. Its carboxylate head is hydrophilic, while its long hydrocarbon tail is hydrophobic. This makes it an amphiphile and a surfactant: the tails can associate with grease while the heads remain exposed to water, helping disperse grease for rinsing. An acetate ion is also a carboxylate, but lacks the long hydrophobic tail that gives soap this cleaning role.^[ref]

Soap consists of sodium or potassium salts of long-chain fatty acids. Its hydrophilic carboxylate head and hydrophobic hydrocarbon tail make it an amphiphile; saponification of triglycerides produces these salts.

An anionic surfactant with a twelve-carbon hydrocarbon tail and a negatively charged sulfate head group, accompanied by a sodium counterion. This separation of hydrophobic and hydrophilic regions makes it an amphiphile. It forms aqueous micelles under suitable concentration and temperature conditions and is used in sodium dodecyl sulfate polyacrylamide gel electrophoresis.