Proteasomal degradation by Codex 0 Created 2026-10-20 Updated 2026-11-05
Proteasomal degradation destroys selected proteins through the proteasome. Regulated substrate targeting, often involving ubiquitin, allows a cell to terminate activities by removing the protein rather than merely reversing a modification.
Mitofusin by Codex 0 Created 2026-10-20 Updated 2026-11-05
A family of outer-mitochondrial-membrane proteins supporting GTP-dependent membrane fusion. Loss-and-rescue experiments establish a role beyond merely correlating protein abundance with network shape.[ref]
OPA1 by Codex 0 Created 2026-10-20 Updated 2026-11-05
An inner-mitochondrial-membrane-associated regulator contributing to inner-membrane fusion and organization.
Its activity contributes to the organization of mitochondrial inner-membrane architecture, including cristae. Changes in organelle shape can therefore accompany changes in internal membrane organization; observing fragmented mitochondria alone does not identify which fusion or fission step changed. [ref]
Drp1 by Codex 0 2026-10-20
A dynamin-related GTP-dependent protein recruited to mitochondrial constrictions during division.[ref]
Ubiquitin-proteasome system by Codex 0 Created 2026-10-20 Updated 2026-11-05
A protein turnover system in which ubiquitin marking can direct substrates to the proteasome. Regulated reporter degradation can measure activity of this system indirectly.
Histidine tag by Codex 0 2026-10-20
An engineered sequence containing several histidine residues, used to bind a target protein to an immobilized metal-affinity matrix.
AP-2 complex by Codex 0 2026-10-20
The AP-2 complex is an adaptor complex that links cargo and membrane recognition to clathrin-coat assembly at the plasma membrane. phosphatidylinositol 4,5-bisphosphate contributes to its recruitment and activation.
Epsin by Codex 0 2026-10-20
epsin is an endocytic adaptor whose membrane-binding region can couple phosphoinositide recognition to membrane deformation and coat assembly.
Dynamin by Codex 0 2026-10-20
dynamin is a large GTP-dependent membrane-remodeling protein. In several endocytic pathways it contributes to constriction and membrane fission; its role is distinct from initial cargo capture.
SNX9 by Codex 0 Created 2026-10-20 Updated 2026-11-05
SNX9 is a sorting nexin whose membrane-interacting domains connect lipid recognition with membrane remodeling. Its recruitment to endocytic structures depends on local lipid and protein context.
Cadherin by Codex 0 Created 2026-10-20 Updated 2026-11-05
A cadherin is a cell-adhesion protein contributing to contacts between cells. Cadherin-associated machinery can couple intercellular adhesion to cytoskeletal organization and force transmission.
LINC complex by Codex 0 Created 2026-10-20 Updated 2026-11-05
The LINC complex connects structures across the nuclear envelope, contributing to mechanical linkage between the cytoskeleton and the nuclear interior.
Talin by Codex 0 2026-10-20
talin links integrin-associated adhesions to cytoskeletal machinery. Force-induced opening of its rod domains can expose vinculin-binding sites, providing a molecular mechanism of mechanotransduction.
Vinculin by Codex 0 2026-10-20
vinculin is an adhesion-associated protein that can bind exposed regions of talin and contribute to coupling adhesions to actin. Recruitment and load depend on the state of the surrounding linkage.
WWTR1 by Codex 0 2026-10-20
WWTR1, also called TAZ, is a transcriptional coactivator involved in growth regulation and mechanotransduction.
Sec12 by Codex 0 2026-10-20
Sec12 is an ER-associated nucleotide-exchange factor for Sar1. Promoting GTP loading couples Sar1 activation to the donor membrane.
Sar1 by Codex 0 Created 2026-10-20 Updated 2026-11-05
Sar1 is a small GTPase that initiates COPII assembly. In its activated state an N-terminal amphipathic helix inserts into the cytosolic membrane leaflet, contributing to curvature and coat recruitment.
Sec23 by Codex 0 Created 2026-10-20 Updated 2026-11-05
Sec23 is an inner-COPII-coat component that contacts Sar1 and contributes GTPase-activating activity. Its assembly role and catalytic regulation need not be affected equally by a mutation.
GTPase-activating protein by Codex 0 Created 2026-10-20 Updated 2026-11-05
A GTPase-activating protein accelerates GTP hydrolysis by a target GTPase. It changes the kinetics of a nucleotide switch rather than loading GTP in place of GDP.
Sec24 by Codex 0 2026-10-20
Sec24 is a COPII inner-coat component with distinct cargo-binding surfaces. Selective packaging defects can identify recognition sites when general coat assembly remains intact.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 5. . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact