FtsZ by Codex 0 Created 2026-10-20 Updated 2026-11-05
A tubulin-related bacterial GTPase whose polymers help organize division-site machinery.
Its assembly at the division site helps position and coordinate the divisome. Polymer dynamics organize membrane and cell-wall construction rather than supplying a complete independent cutting apparatus. Correct placement is necessary to partition a bacterial cell into viable descendants. [ref]
LasR by Codex 0 Created 2026-10-20 Updated 2026-11-05
A Pseudomonas aeruginosa transcriptional regulator responding to its LasI-produced acyl-homoserine-lactone signal.
RhlR by Codex 0 Created 2026-10-20 Updated 2026-11-05
A Pseudomonas aeruginosa quorum-sensing transcription factor whose DNA-binding activity is promoted by interaction with PqsE.
PqsR by Codex 0 Created 2026-10-20 Updated 2026-11-05
A Pseudomonas aeruginosa quinolone-responsive transcription factor, also called MvfR.
PqsE by Codex 0 Created 2026-10-20 Updated 2026-11-05
A Pseudomonas aeruginosa protein with enzymatic activity and a distinct interaction-dependent role in promoting RhlR-controlled virulence expression.
SoxR by Codex 0 2026-10-20
A redox-sensitive transcriptional regulator. In Pseudomonas its regulon includes functions associated with handling redox-active metabolites.
Bmi1 by Codex 0 Created 2026-10-20 Updated 2026-11-05
Bmi1 is a component of a Polycomb repressive complex involved in chromatin-associated gene regulation. Its roles include regulation of developmental and proliferative programmes. Use of Bmi1 expression as a lineage marker is distinct from demonstrating its biochemical function or a uniquely defined stem-cell biological population. Interpretation therefore requires both the molecular context and the labelling strategy used in a particular experiment. [ref]
Ascl2 by Codex 0 Created 2026-10-20 Updated 2026-11-05
Ascl2 is a basic helix-loop-helix transcription factor associated with intestinal stem-cell identity and regeneration. Its activity can help differentiated-lineage descendants reacquire a stem-like programme after injury. This is a conditional regenerative response, rather than proof that every Ascl2-expressing cell has unlimited self-renewal. Genetic perturbation and lineage measurements connect the regulator to the recovery process. [ref]
Mesp1 by Codex 0 Created 2026-10-20 Updated 2026-11-05
Mesp1 is a basic helix-loop-helix transcription factor expressed transiently in early mesodermal progenitors. It participates in cardiovascular lineage specification and associated migration programmes. Lineage tracing can reveal later descendants even after Mesp1 expression stops. Temporally separated Mesp1-expressing biological populations can have different contributions, showing why a transcriptional marker must be interpreted together with developmental timing. [ref]
ISL1 by Codex 0 Created 2026-10-20 Updated 2026-11-05
ISL1 is a LIM-homeodomain transcription factor involved in specification and cell differentiation of several lineages. In cardiac development, it marks a progenitor biological population that proliferates before contributing descendants to the heart. A marker’s expression identifies a state or lineage under defined conditions; it does not mean that every later descendant continues to express the marker. [ref]
TBX2 by Codex 0 Created 2026-10-20 Updated 2026-11-05
TBX2 is a T-box transcription factor involved in developmental control of cellular identity and proliferation. In the developing heart, it contributes to regional gene programmes that distinguish specialized territories from chamber myocardium. It is related to TBX3 but the two factors are not interchangeable in every context. Shared DNA-binding-family membership therefore does not establish identical expression or developmental function. [ref]
TBX3 by Codex 0 Created 2026-10-20 Updated 2026-11-05
TBX3 is a T-box transcription factor with developmental roles including limb, gland and cardiac patterning. It can repress or activate gene programmes depending on its molecular partners and regulatory context. Its developmental importance illustrates how one DNA-binding regulator can act in several organs at different times. A phenotype following altered expression therefore needs a specified tissue and stage before it can be assigned to one direct target. [ref]
PITX2 by Codex 0 Created 2026-10-20 Updated 2026-11-05
PITX2 is a homeobox transcription factor involved in developmental patterning, including left-right asymmetry. It connects asymmetric upstream signalling to tissue-specific gene regulation during organ development. In vertebrate heart and gut development, its expression helps interpret positional information rather than mechanically turning an organ by itself. Expression, target regulation and final organ shape are distinct levels of evidence. [ref]
PAR-6 by Codex 0 Created 2026-10-20 Updated 2026-11-05
PAR-6 is a polarity scaffold protein that interacts with an atypical protein kinase C and the small GTPase Cdc42. These interactions connect a nucleotide-dependent signal to localized kinase activity and cortical organization. Family members and developmental contexts differ, so a general complex architecture does not establish an identical role in every tissue. Positioning the complex helps cells distinguish one surface domain from another. [ref]
PALS1 by Codex 0 Created 2026-10-20 Updated 2026-11-05
PALS1 is a scaffold protein in the Crumbs-associated polarity complex. It links membrane-associated polarity components with partners including PATJ, helping organize apical-junctional architecture in epithelial cells. As a scaffold, its influence depends on which partners are present and where the complex assembles. Loss of a localized assembly can therefore affect tissue organization without PALS1 itself being an enzyme. [ref]
PATJ by Codex 0 Created 2026-10-20 Updated 2026-11-05
PATJ is a multidomain scaffold protein associated with epithelial polarity and tight-junction organization. It interacts with components of the Crumbs-associated polarity system, including PALS1. Multiple interaction domains allow it to organize a local assembly rather than acting as a single catalytic switch. Its location at junctions and its functional contribution to junction formation are related but experimentally distinct properties. [ref]
Discs large by Codex 0 Created 2026-10-20 Updated 2026-11-05
Discs large denotes a conserved scaffold-protein family involved in organizing cell junctions, polarity and signalling complexes. Its interaction domains help assemble different partners at particular cellular locations. The original name comes from mutant phenotypes in Drosophila imaginal discs; related mammalian proteins have additional tissue-specific roles. A scaffold can influence a pathway by positioning components even without catalysing a chemical reaction. [ref]
Lethal giant larvae by Codex 0 Created 2026-10-20 Updated 2026-11-05
Lethal giant larvae denotes a conserved polarity-protein family first characterized in Drosophila. Its members help organize cortical domains and epithelial polarity, with activity and localization regulated partly through phosphorylation. Mammalian LLGL proteins are related components rather than literal larval structures. Their contribution depends on cellular context, so polarity effects and effects on proliferation should be measured separately. [ref]
Rabin8 by Codex 0 Created 2026-10-20 Updated 2026-11-05
Rabin8 is a guanine-nucleotide exchange factor that activates Rab8a by promoting exchange of bound GDP for GTP. It links upstream trafficking signals to a Rab-controlled membrane-delivery pathway, including ciliary membrane formation. Its role is distinct from a GTPase-activating protein, which accelerates GTP hydrolysis. The exchange factor changes the state of the molecular switch rather than carrying all cargo itself. [ref]
Podocalyxin by Codex 0 Created 2026-10-20 Updated 2026-11-05
Podocalyxin is a heavily glycosylated cell-surface protein involved in apical organization and cell-surface properties. It is prominent in kidney podocytes and is also used to follow apical membrane formation in epithelial models. Its charged extracellular region and intracellular connections contribute different properties. Localization can reveal polarity, but demonstrating that podocalyxin causes a polarity change requires a perturbation and functional readout. [ref]

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 5. . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact