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A small increase in temperature can produce a large increase in a reaction rate. In the simplest Arrhenius equation model, warming from $300$ to $310\mathrm{K}$ increases a rate constant with $E_a=80\mathrm{kJ}\mathrm{mo}{\mathrm{l}}^{-1}$ by about $2.81$ times, even though the absolute thermodynamic temperature rises by only about $3.33\%$. This sensitivity helps explain why cooling can slow unwanted chemical reactions and why a hot process can become difficult to control. The comparison assumes the same rate law and reactant concentrations; the activation energy characterizes $k(T)$, rather than every change in the measured reaction rate.

The physical motivation is the distribution of molecular energies. Warming changes the Boltzmann distribution, increasing the relative population of energetically costly configurations. A transition state can therefore become much more accessible than the modest change in average kinetic energy might suggest. The exponential function in an Arrhenius equation captures such sensitivity in a simple model; it is not a universal formula for the fraction above every barrier in a Maxwell-Boltzmann distribution.^[ref]

Activation energy quantifies how strongly a rate constant depends on thermodynamic temperature. For a positive rate constant $k(T)$, the empirical definition iswhere $R$ is the molar gas constant and $k_{\mathrm{ref}}>0$ is a fixed reference with the same units as $k$. The ratio is a dimensionless quantity, keeping the natural logarithm meaningful without changing its derivative. Thus $E_a$ is a molar energy, commonly in $\mathrm{J}\mathrm{mo}{\mathrm{l}}^{-1}$ or $\mathrm{kJ}\mathrm{mo}{\mathrm{l}}^{-1}$. The Arrhenius equation makes $E_a$ constant over its assumed range. This rate-based definition, and the need for care when identifying it with a threshold on a potential energy surface, are stated in the activation energy.

In a simple barrier picture, reaching a transition state costs energy relative to the starting reactants. The height of that barrier is different from the difference between the reactants and reaction products. An energetically favourable endpoint can still be reached slowly. An energy profile makes the distinction visible, while an Arrhenius plot tests temperature sensitivity from rate constants. A measured $E_a$ need not equal a barrier read from an arbitrarily chosen diagram.

For a computed example, assume a first-order reaction has $k(300\mathrm{K})=0.100{\mathrm{s}}^{-1}$, constant $E_a=80\mathrm{kJ}\mathrm{mo}{\mathrm{l}}^{-1}$, and a temperature-independent pre-exponential factor. The Arrhenius equation givesHence $k(310\mathrm{K})\approx 0.281398{\mathrm{s}}^{-1}$. Its half-life falls from $\ln 2/0.100\approx 6.93147\mathrm{s}$ to $\ln 2/0.281398\approx 2.46322\mathrm{s}$. These are chosen model parameters, not measurements of an identified chemical reaction. The exponent uses kelvin, not unconverted Celsius temperatures, and $80000\mathrm{J}\mathrm{mo}{\mathrm{l}}^{-1}$ must match $R$ in $\mathrm{J}\mathrm{mo}{\mathrm{l}}^{-1}{\mathrm{K}}^{-1}$.

A microscopic reaction energy barrier belongs to a specified path on a potential energy surface. An experimental activation energy belongs to a specified rate constant and its temperature dependence. A multi-step reaction mechanism can change which step controls the observed conversion, and a temperature-dependent pre-exponential factor contributes to the observed activation energy. Even the Gibbs energy of activation of transition state theory is a different quantity: it incorporates entropy as well as enthalpy and depends on the standard states. These distinctions prevent a fitted Arrhenius plot from being mistaken for a direct microscopic energy measurement.^[ref]

Catalysis illustrates the separation between a path and its endpoints. At the same temperature and with the same reactants, reaction products, and standard states, a regenerated catalyst changes the available reaction mechanism and rate constants, while the overall standard change in Gibbs free energy and the equilibrium constant remain the same:For a reversible first-order reaction pair $\mathrm{A}\rightleftharpoons \mathrm{B}$, consistency at chemical equilibrium requires $k_f/k_r=K$. A model that multiplies only $k_f$ by a catalytic speedup while holding $k_r$ fixed would change this ratio and misrepresent catalysis. This simple ratio applies to that specified rate law; a multi-step catalytic reaction mechanism needs its own rate equations. A potential-energy profile alone cannot determine $K$, because its endpoint difference is not generally the standard change in Gibbs free energy.^[ref]

An energy profile plots an explicitly specified energy against a reaction coordinate. Identify whether the vertical axis is potential energy, enthalpy, or Gibbs free energy; these descriptions are related but not interchangeable. A potential-energy profile describes a path through configurations, while a free-energy description also accounts for the relevant thermodynamic conditions.

For the two chosen profiles, the reaction energy barriers from the reactants are $80$ and $50\mathrm{kJ}\mathrm{mo}{\mathrm{l}}^{-1}$. From the reaction products, the same maxima are $100$ and $70\mathrm{kJ}\mathrm{mo}{\mathrm{l}}^{-1}$ higher. Both paths have endpoint difference $-20\mathrm{kJ}\mathrm{mo}{\mathrm{l}}^{-1}$. The barrier is measured from the relevant starting endpoint, not from an arbitrary zero of potential energy.

The appeal of the diagram is that it separates two useful questions: which endpoint is lower, and which path is easier to traverse? Catalysis changes the route through transition states while retaining the endpoint thermodynamics of the same overall chemical reaction. A real catalytic route may have several steps and reaction intermediates; the two simple curves do not specify such a reaction mechanism. The plotted potential-energy difference alone is not an equilibrium constant or a calculated rate constant. See Chemistry 2e, 12.7: alternative reaction routes and catalysis.

A potential-energy profile plots the potential energy of the reacting system along a specified path from reactants through a transition state to reaction products. It is a particular kind of energy profile. For an elementary reaction, a suitable reaction coordinate parametrizes the path; a multi-step reaction mechanism needs the coordinates of its successive steps. See the IUPAC Gold Book: potential-energy profile.

A reaction coordinate parametrizes changes in molecular configuration along a chemical reaction path. It can involve a bond length, a bond angle, or a combination of geometric changes. It is not elapsed time and is not the bulk extent of reaction: one describes configurations, while the other accounts for how much material has converted. The precise choice matters when interpreting an energy profile. See the IUPAC Gold Book: reaction coordinate.

A reaction energy barrier is the height of a specified peak relative to the starting state in an energy profile. State which energy is used and which direction is being considered. A schematic barrier is not automatically the empirical activation energy obtained from the temperature dependence of a rate constant.

A reaction intermediate is formed during a reaction mechanism and consumed in a subsequent step, cancelling from the net chemical equation. It can accumulate, as I does in the consecutive first-order reaction mechanism. A reaction intermediate can also connect transformations in energy coupling. Unlike a catalyst, it need not be present before conversion begins.^[ref]

A reaction intermediate is distinct from a transition state: the former can persist between steps, whereas the latter describes passage through a barrier. The existing potential energy surface and energy profile provide the configuration-space picture; the time-dependent concentration of an intermediate instead measures an ensemble of reacting entities. Low concentration or short lifetime can make detection difficult, so failure to detect a proposed reaction intermediate is not by itself proof of absence. Conversely, detecting a chemical species does not establish that it carries the proposed route to the final reaction products; it could belong to a competing route.

A reaction mechanism describes how reactants become reaction products through specified elementary reactions. Adding the steps must recover the overall chemical equation; intermediate chemical species cancel. That accounting is necessary, but the proposed steps must also predict a rate law compatible with experiment. Several reaction mechanisms can pass the same test.^[ref]

For example, the stipulated steps $\mathrm{A}+\mathrm{B}⟶\mathrm{I}$ and $\mathrm{I}⟶\mathrm{P}$ sum to $\mathrm{A}+\mathrm{B}⟶\mathrm{P}$. I is a reaction intermediate: it is formed and then consumed. The catalyst C in the existing catalytic cycle instead starts available, participates, and is regenerated; its bound form can be a reaction intermediate. Both can disappear from the summed chemical equation, so cancellation alone does not distinguish their roles. Cancellation is algebraic bookkeeping, not an assertion that every step finishes instantaneously.

The net chemical equation supplies consumption ratios, not a clock. For the stipulated two-step example, directional reaction rates $r_1=k_1[\mathrm{A}][\mathrm{B}]$ and $r_2=k_2[\mathrm{I}]$ give $d[\mathrm{I}]/dt=r_1-r_2$ and $d[\mathrm{P}]/dt=r_2$. Initially $[\mathrm{I}]=0$ can mean zero reaction product formation while A already disappears. In particular, $-d[\mathrm{A}]/dt=d[\mathrm{P}]/dt$ requires negligible intermediate accumulation here. A single elementary reaction with the same net chemical equation would instead predict immediate formation at $k[\mathrm{A}][\mathrm{B}]$. Measuring both sides can reveal a distinction hidden by the net equation.

This makes reaction mechanisms useful for designing observations: follow a candidate reaction intermediate, measure individual reaction products, or vary one starting concentration at a time. The consecutive first-order reaction mechanism quantifies an intermediate's rise and fall; the parallel first-order reaction mechanism shows how identical reactant traces can conceal different reaction products. The acetone iodination rate-law experiment connects such reasoning to a real laboratory protocol. The existing reaction coordinate, potential energy surface, and energy profile describe configurations and barriers along a route; a concentration plotted against time describes a different observable.