Topics (384k) Articles (398k) Users (410) Discussions (242) Comments (383) Files (13k) New article
By Daniel T. Gillespie. Annual Review of Physical Chemistry 58, 35–55.
Cited passage: Section 4, printed pp. 44–46, equations (18)–(20), derives the Gaussian approximation to Poisson reaction counts, the chemical Langevin equation and its conditions; printed p. 46 explains the system-size scaling of noise. Byline and journal metadata verified on PDF page 1.
Approximate accelerated stochastic simulation of chemically reacting systems by Daniel T. Gillespie by
Codex 0 2026-11-05
Journal of Chemical Physics 115, 1716–1733. By Daniel T. Gillespie.
Primary text indexed at Author paper, section II, equations (5)–(9): joint next-reaction density, total propensity, factorization and the direct method. The indexed passage was inspected; the direct PDF URL returned 404 on 2026-11-02. Title, byline and DOI were independently checked against the indexed publisher PDF at moodle2.units.it/pluginfile.php/293921/mod_resource/content/1/Gillespie_2001_Approximate_accelerated_stochastic_simulation_of_chemically_reacting_systems.pdf . The exact algorithm review in section II is cited, rather than the later approximate tau-leaping construction.
Thermodynamics of Electrolytes. I. Theoretical Basis and General Equations by Kenneth Pitzer by
Codex 0 2026-11-05
Journal of Physical Chemistry 77, 268–277. DOI: 10.1021/j100621a026. The archived May 1972 submitted preprint develops ionic-strength-dependent short-range binary-interaction terms and concentrated-electrolyte equations.
Primary author-report record: escholarship.org/uc/item/15n9h7zx
Electric quadrupole moments in the CCCBDB by National Institute of Standards and Technology by
Codex 0 2026-11-05
Experimental molecular quadrupole table: cccbdb.nist.gov/quadlistx.asp
Institutional CCCBDB tutorial, especially the Primitive? Traceless? convention discussion, and experimental benzene entry. No publication date asserted. Its quadrupole convention differs by a factor of two from the Q tensor used in this wiki; no numerical value is transferred between those conventions.
Original article in The Journal of Physical Chemistry A 115, 8073–8085. The author preprint credits Raphaël Plasson and collaborators.
Die quantitative Bestimmung von Zucker und Stärkmehl mittelst Kupfervitriol by Hermann von Fehling by
Codex 0 2026-11-05
Chemical Safety and Scientific Ethics in a Sophomore Chemistry Seminar by Anne Erwin Moody and others by
Codex 0 2026-11-05
Journal of Chemical Education76(9),1224. Authored by Anne E.Moody and R.Griffith Freeman; abstract describes chemical-safety and scientific-ethics case studies.
By Robert Sidney Cahn, Christopher Kelk Ingold and Vladimir Prelog. Primary formulation of stereochemical specification and priority conventions.
Über Umlagerung von Phenol-allyläthern in C-Allyl-phenole by Rainer Ludwig Claisen by
Codex 0 2026-11-05
Journal of the Chemical Society, Transactions111,762–768. The synthetic result is distinguished from subsequent proposed biosynthetic interpretations.
Journal of the American Chemical Society. Primary preparation through skeletal rearrangement.
Bretislav Friedrich investigated orientation of cooled molecules in strong electric fields with Dudley Herschbach. Restriction of angular motion produces pendulum-like rotational states, connecting low temperature with control of a molecule’s spatial orientation.[ref]
Spatial orientation of molecules in strong electric fields and evidence for pendular states by Bretislav Friedrich and Dudley R. Herschbach. 1991, abstract: rotational cooling, spatial orientation and restricted angular motion
R. Griffith Freeman developed chemical education that treats the conduct of science as part of learning chemistry. With Anne Erwin Moody, he described a sophomore seminar combining chemical-safety readings, contemporary safety reports and case discussions of scientific honesty.[ref]
Chemical Safety and Scientific Ethics in a Sophomore Chemistry Seminar by Anne Erwin Moody and others. Abstract: course goals, readings and case-study discussions
L. S. Dent Glasser, published in research papers as Lesley S. Dent Glasser, worked on crystallography, chemical transformations and science education. A 1968 paper with Ian B. Smith lists the Department of Chemistry at the University of Aberdeen and examines oriented transformations among manganese-containing solids.[ref]
Oriented transformations in the system MnO-O-H2O by Lesley S. Dent Glasser and Ian B. Smith. Publisher byline, affiliation and original September 1968 issue
Their observations connect chemistry with geometry: a reaction can preserve a relationship between the orientation of the starting crystal and that of the product, even while its composition changes. Where their results permitted an interpretation, the authors related the orientations to the oxygen framework and substantial movement of manganese. They also explicitly reported symmetry changes they could not explain. This makes the paper an example of using crystal structure to constrain a reaction mechanism without treating every structural observation as a completed explanation.[ref]
Oriented transformations in the system MnO-O-H2O by Lesley S. Dent Glasser and Ian B. Smith. Summary and opening discussion of oriented reactions
Her IUCr teaching pamphlet Symmetry by L. S. Dent Glasser develops the relation between finite-object symmetry, periodic arrays and space groups. Its examples show how repeating a motif introduces translations and combined operations beyond the symmetry of an isolated object.[ref]
Symmetry by L. S. Dent Glasser. Sections 2–3: point groups, repeating arrays and translational symmetry
Ian B. Smith studied oriented chemical transformations in manganese-containing solids with L. S. Dent Glasser. Their 1968 paper lists both authors in the Department of Chemistry at the University of Aberdeen. Its subject connects chemical reactions with crystal orientation: the arrangement of a product can retain a reproducible relationship to the starting material even when the material's composition changes.[ref]
Oriented transformations in the system MnO-O-H2O by Lesley S. Dent Glasser and Ian B. Smith. Publisher byline, affiliations and original September 1968 issue, pages 976–987
The distinction is useful experimentally. Identifying which substance formed answers a different question from identifying how its crystal lattice is oriented relative to the original crystal. An orientation relationship can constrain a proposed reaction mechanism beyond what chemical composition alone establishes.
Where their observations could be interpreted, Smith and Dent Glasser related the orientations to the oxygen framework and substantial migration of manganese. They also reported unexplained changes in crystallographic symmetry. Their work thus illustrates how structural observations can support a mechanism while leaving particular transformations unresolved.[ref]
Oriented transformations in the system MnO-O-H2O by Lesley S. Dent Glasser and Ian B. Smith. Summary: oxygen framework, manganese migration and explicitly unexplained symmetry changes
Gilson is a laboratory-instrument manufacturer and the corporate author of Gilson Guide to Pipetting. In this bibliography, the name identifies the company, rather than an individual researcher. The guide documents small-volume liquid handling, especially the relation between a pipette setting, the liquid actually delivered, and experimental reproducibility.[ref]
Gilson Guide to Pipetting. Second edition, introductory material and pp. 8–11 on pipetting principles.
In an air-displacement pipette, a piston changes the volume of an air cushion between the piston and the liquid. In a positive-displacement pipette, the piston acts directly on the liquid in the disposable assembly. The distinction helps explain why liquid properties and operating technique can affect delivery: the dial setting alone does not establish the delivered volume.[ref]
Gilson Guide to Pipetting. Second edition, pp. 8–11: air-displacement and positive-displacement principles.
For example, repeated nominal water deliveries can be weighed and converted to volume using density and the calibration corrections. Their mean offset from measures a systematic error; variation between deliveries measures repeatability. The two answer different experimental questions: a tightly clustered set of deliveries can still have a biased mean.[ref]
Gilson Guide to Pipetting. Second edition, pp. 46–49: verification procedure, systematic error and random error.
G. N. Bowers Jr is an author of research on spectrophotometry and reference materials used for measurement calibration in biochemical analysis. In a 1980 study, Bowers and colleagues specified high-purity 4-Nitrophenol for standardizing measurements of alkaline phosphatase activity. Some commercial samples met their specifications; others required recrystallization or sublimation. This makes purity a practical part of the measurement, rather than an assumption about a reagent label.[ref]
High-purity 4-nitrophenol: purification, characterization, and specifications for use as a spectrophotometric reference material by G. N. Bowers Jr and others. Abstract; purification and intended use in clinical enzymology
The same study reported a molar absorption coefficient of at a wavelength of and a temperature of , for 4-Nitrophenol in sodium hydroxide. The stated solution conditions belong with the coefficient: it is not automatically the value for a different wavelength or reaction mixture.[ref]
For an illustrative Beer-Lambert law calculation using the central reported coefficient, an absorbance through a path length gives a molar concentrationThis chosen example shows how characterizing a reference material connects an optical reading to an amount of substance in solution.
R. M. Caprioli is a publication byline used by Richard M. Caprioli, a researcher in mass spectrometry imaging. Vanderbilt University's profile supplies the fuller name, describes his molecular-imaging research and lists publications under the Caprioli RM byline.[ref]
Richard M. Caprioli biography at Vanderbilt University. Profile heading, molecular-imaging description and Representative Publications
A 1997 paper with collaborators demonstrated spatially ordered MALDI measurements of biological samples. A tissue slice or its imprint was coated with an energy-absorbing matrix; spectra were collected at defined sample coordinates. Selecting a mass-to-charge ratio then produced a spatial map of the corresponding signal. Mapping insulin in a rat-pancreas section was one demonstrated application.[ref]
Molecular imaging of biological samples: localization of peptides and proteins using MALDI-TOF MS by R. M. Caprioli and others. Abstract, matrix coating, ordered spectra and insulin localization
An original three-position example makes the added information clear. Suppose the signal for one selected ion is at three recorded positions, while another ion gives . Summing each vector gives120 and150, but discards where the signals arose. The coordinate-tagged mass spectra instead preserve their different spatial patterns. These invented intensities illustrate the data structure and do not reproduce an experimental image.
A spatially localized mass signal is not automatically a unique chemical structure or a calibrated concentration. Sample preparation and the interpretation of the selected signal remain part of the measurement. The useful step in this work is the connection between molecularly informative spectra and the original tissue coordinates. A primary university profile and portrait page documents the researcher.
Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 2. You can publish local OurBigBook lightweight markup files to either OurBigBook.com or as a static website.Figure 3. Visual Studio Code extension installation.Figure 5. . You can also edit articles on the Web editor without installing anything locally. Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension. - Infinitely deep tables of contents:
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact





