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An amino acid combines carboxylic acid and amine functionality in the same molecule; the name alone does not specify their separation. An alpha-amino acid has its amino nitrogen attached to the carbon immediately adjacent to the carboxyl carbon, the amino acid alpha carbon. For example, ${\mathrm{H}}_2\mathrm{N}-\mathrm{C}{\mathrm{H}}_2-\mathrm{COOH}$ is glycine, whereas ${\mathrm{H}}_2\mathrm{N}-\mathrm{C}{\mathrm{H}}_2-\mathrm{C}{\mathrm{H}}_2-\mathrm{COOH}$ has an extra intervening carbon and is not an alpha-amino acid. These chemical formulas describe connectivity, not the predominant protonation state in water.

Most common proteinogenic amino acids share the skeleton ${\mathrm{H}}_2\mathrm{N}-\mathrm{CH}(R)-\mathrm{COOH}$, with $R$ the amino acid side chain. In glycine, $R$ is hydrogen; in alanine, $R=\mathrm{C}{\mathrm{H}}_3$. Proline is a useful exception to the displayed primary-amine skeleton: its amino nitrogen is part of a ring and has a second carbon substituent. The shared backbone permits assembly into polypeptides, while different amino acid side chains give the resulting proteins diverse chemistry. ^[ref]

In a chemical solution, protonation changes the electric charges without changing this backbone. Free glycine near neutral pH is predominantly ${\mathrm{H}}_3{\mathrm{N}}^{+}-\mathrm{C}{\mathrm{H}}_2-\mathrm{CO}{\mathrm{O}}^{-}$, a zwitterion. Its positive and negative groups are joined within one molecule; zero net electric charge does not mean absence of local electric charges, nor does it mean the uncharged drawing ${\mathrm{H}}_2\mathrm{N}-\mathrm{C}{\mathrm{H}}_2-\mathrm{COOH}$ predominates. Glycine protonation explains how lowering or raising pH changes the balance. ^[ref]

Building a protein joins the carboxyl carbon of one amino acid to the amino nitrogen of another through a peptide bond, an amide linkage. The formal net condensation loses the elements of water; cellular translation uses activated substrates at a ribosome, rather than simply mixing free amino acids in water. Incorporated units are amino acid residues. The interior amide groups no longer have the same acid/base behavior as the two free terminal groups of glycine, so its free-molecule glycine titration cannot be copied independently at every chain position. ^[ref]

Chirality distinguishes most common proteinogenic amino acids from glycine. The other nineteen members of the conventional twenty have a stereocenter at their amino acid alpha carbon; ordinary translation incorporates their L forms. Glycine's two identical hydrogen substituents make it achiral. Thus being an amino acid, or even an alpha-amino acid, does not by itself imply chirality. ^[ref]

The three principal aqueous glycine forms differ by loss of one proton at each step:Call these glycine forms $G^{+}$, $G^0$ and $G^{-}$, respectively: a cation, a zwitterion and an anion, with net electric charges $+e$, $0$ and $-e$, where $e$ is the elementary charge. $G^0$ specifically denotes the zwitterion, not an uncharged amino/carboxyl drawing. The first dissociation removes the carboxyl proton; the second removes a proton from the positively charged nitrogen. The chemical equilibrium changes are reversible, not three permanently separate kinds of glycine. ^[ref]

For all calculations and both diagrams here, explicitly stipulate the pKa values $\mathrm{p}{K}_{a1}=2.35$ and $\mathrm{p}{K}_{a2}=9.78$. These are illustrative model inputs, not measurements from the glycine titration experiment or a claim of universal constants. Actual acid dissociation constants depend on temperature and on the convention used for thermodynamic activity; apparent concentration-based values also depend on ionic strength. For comparison, the inspected textbook tabulates $2.34$ and $9.60$ for glycine, which would give a different isoelectric point. ^[ref]

Adding sodium hydroxide to acidified glycine successively removes its two titratable protons. Two broad buffer solution regions appear around the two pKa values, separated by a steep pH rise near the isoelectric point. This is useful evidence for two separated acid-base chemistry steps even though the changing chemical species are invisible. In the approximation that added hydroxide only changes glycine protonation, $b=1-\bar{z}$ is the added base amount of substance per initial amount of substance of glycine. Then $b\approx 0.5$, $1$ and $1.5$ correspond to $\mathrm{p}{K}_{a1}$, $\mathrm{pI}$ and $\mathrm{p}{K}_{a2}$; endpoints are not exactly pure chemical species. ^[ref]

For the solid-curve model, start with $n_G=0.00200\mathrm{mol}$ of glycine in $V_0=0.0200\mathrm{L}$ and exactly $n_G$ of fully dissociated hydrochloric acid; this fixes the chloride inventory, but does not force every glycine molecule to remain $G^{+}$. Let the sodium hydroxide concentration be $C_B=0.100\mathrm{mol}{\mathrm{L}}^{-1}$ and $b=n_{\mathrm{NaOH}}/n_G$. Assume volume is additive and no other ions are present; stipulate $K_w=10^{-14}$ for self-ionization of water at a temperature of $25{}^{\circ }\mathrm{C}$. ThenBalancing all positive and negative electric charges requiresSolving this equation gives the solid curve. It remains finite at $b=0$ and beyond $b=2$, where ignoring free hydronium and hydroxide would fail. At the first pKa, the full model gives $b\approx 0.436$, rather than $0.5$: appreciable free hydronium makes that half-equivalent shortcut inaccurate. At the second pKa, $b\approx 1.502$. Known acid inventory, dilution, and thermodynamic activity assumptions are therefore part of any quantitative interpretation, not optional corrections inferred from the curve's shape.