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For emission take integers $n_i>n_f\ge 1$. Applying conservation of energy to the model's internal energy difference, while neglecting the much smaller whole-atom photon recoil, givesThus Johannes Robert Rydberg's Rydberg formula is a difference of two energy levels expressed as a spectroscopic wavenumber. The same constants determine every line; there is no new parameter for each electronic transition. With the chosen inputs, $R_H=1.096775834\times 10^7{\mathrm{m}}^{-1}$. All wavelengths below are calculated in vacuum, not air, and are rounded model predictions rather than historical measurements.

The conventional names commemorate Theodore Lyman and Johann Jakob Balmer. Fixing $n_f=1$ produces the ultraviolet Lyman series, beginning with the Lyman-alpha line; fixing $n_f=2$ produces the Balmer series. As $n_i\to \infty$, the wavelength approaches $n_f^2/R_H$: $91.1763\mathrm{nm}$ at the Lyman limit and $364.705\mathrm{nm}$ for the Balmer series. Crowding follows directly from $E_{n+1}-E_n\sim 2B_H/n^3$. Discreteness therefore coexists with a series limit.

Correct line positions do not give wave intensities, lifetimes or electric-dipole selection rules for hydrogen. Those require a theory of the wavefunctions and their coupling to electromagnetic radiation. The circular model also omits spin, relativistic corrections and the Lamb shift. Its successful gross energy levels do not make its assumed orbits modern atomic orbitals.

The Lyman-alpha forest is the multitude of foreground Lyman-alpha absorption features in a distant quasar's spectrum, at wavelengths shorter than its own redshifted Lyman-alpha emission. The quasar supplies a bright background; intervening neutral hydrogen atoms remove photons near their local Lyman-alpha line resonance. Many dips can therefore come from one atomic transition encountered at different redshifts, rather than from many different chemical elements. Some features are instead transitions of other ions, so a dip alone does not identify Lyman-alpha absorption. This makes faint foreground gas detectable through the light it removes, even when its own emission would be difficult to see. ^[ref].

Ignoring peculiar velocity for the moment, an absorber at cosmological redshift $z_a$ puts its Lyman-alpha line atThe rest wavelength is in the ultraviolet; at $z_a=2$ it appears at $3647.01\text{A˚}$ in the optical spectrum. In a toy sightline to a quasar at $z_Q=3$, absorbers at $z_a=2,2.35,2.7$ appear at $3647.01,4072.4945,4497.979\text{A˚}$, all shortward of the quasar's Lyman-alpha emission position $4862.68\text{A˚}$. The absorbing atoms see the selected photons at their own resonance; the observed dip's redshift belongs to the foreground gas. Peculiar velocity adds a Doppler shift, so the inferred $z_a$ is not a pure distance coordinate. The rest wavelength and resonance interpretation are given in Rauch (1998), section 1.

The diagram uses invented optical depths and 26 Doppler cores; three selected foreground regions are marked. Their drawn positions and sizes are schematic. The dashed comparison imposes a uniform optical depth $\tau =2$, giving transmission $e^{-2}\simeq 0.135$ throughout the chosen foreground band. It is an idealized smooth-absorption model, not a measured spectrum or a prediction of the actual intergalactic medium.

The smooth comparison explains the Gunn-Peterson effect: neutral hydrogen distributed throughout an expanding intergalactic medium can absorb continuously over a wavelength interval, because different parts of the path resonate with different observed wavelengths. The resolved Lyman-alpha forest instead has strong transmission fluctuations and distinguishable absorption lines. These need not represent isolated compact clouds: diffuse sheets and filaments in the cosmic web can generate peaks in optical depth along one line of sight. A continuously varying gas distribution can look like a collection of lines. ^[ref]. ^[ref].

An early observation makes the identification concrete. Lynds's 1971 paper analyzed six spectrograms of the quasar 4C 05.34, with emission redshift $2.877$, taken in spring 1970 using an image-tube spectrograph on Kitt Peak's 84-inch telescope. Five covered $3200$–$7500\text{A˚}$ with approximately $10\text{A˚}$ resolution; the most informative covered about $3500$–$6000\text{A˚}$ at $5\text{A˚}$ resolution. Its reproduced spectrogram shows the strong Lyman-alpha emission flanked mostly on the short-wavelength side by numerous absorption lines. Lynds tabulated their wavelengths and estimated strengths, identified five absorption redshift systems, and proposed that many remaining unidentified lines were the same Lyman-alpha line at additional redshifts. He explicitly warned about blending, an incomplete census of weak lines, and wavelength errors around $0.5$–$1\text{A˚}$. The result established a striking spectral pattern; the paper's proposed interpretation did not measure a separate physical cloud for every dip. ^[ref].

A contrasting observation demonstrates smooth, very strong absorption. Becker and collaborators (2001) used the Echelle Spectrograph and Imager on Keck II to observe the quasar SDSSp J103027.10+052455.0 at $z_Q=6.28$. Sky lines gave an instrumental full width at half maximum of about $1.8\text{A˚}$ near $8500\text{A˚}$, or spectral resolving power $R\simeq 4700$. After sky subtraction and flux calibration, the mean continuum-normalized transmission over $8450$–$8710\text{A˚}$ was $0.0038\pm 0.0026$, consistent with zero; this corresponds to absorption redshifts approximately $5.95$–$6.16$. They identified a Gunn-Peterson trough. Crucially, resonant Lyman-alpha absorption is so sensitive that even a small neutral fraction can make transmission undetectable: the trough alone does not establish a mostly neutral intergalactic medium or uniquely date reionization. ^[ref].

What a spectrum constrains is a radiative transfer problem. For an ideal foreground screen with negligible emission into the observed beam, the intrinsic continuum-normalized transmission isHere $F$ is spectral radiative flux, $F_{\mathrm{cont}}$ is its unabsorbed continuum, $\tau$ is optical depth, $n_{\mathrm{HI}}$ is neutral hydrogen number density, and $N_{\mathrm{HI}}$ is neutral hydrogen column density along proper path length $\ell$. A Voigt profile model constrains redshift, column density and a velocity width together. A nearly black line has lost much of its sensitivity to further increases in optical depth; blending and an uncertain continuum can also admit different fitted components. Finite spectral resolving power and noise limit which widths and weak features can be measured. ^[ref]. ^[ref].

For a purely thermal Doppler core, use the velocity convention $\tau (v)\propto \exp [-(v-v_0{)}^2/b^2]$. The Maxwell-Boltzmann velocity distribution then giveswhere $k_B$ is the Boltzmann constant, $T$ is temperature and $m_{\mathrm{H}}$ is a hydrogen atom's mass. This $b$ is $\sqrt{2}$ times the Gaussian distribution's standard deviation. Higher temperature spreads the same column density over more velocities. An instrument also broadens a line: locally, for a nearly flat continuum, the recorded transmission is approximately the convolution of $\mathcal{T}$ with the normalized instrumental response, not the exponential of a convolved optical depth. A Gaussian response with full width at half maximum $c/R$ has standard deviation $c/[R\sqrt{8\log 2}]$, where $c$ is the speed of light and $R$ the spectral resolving power.

The upper model fixes the integral $\int \tau (v)dv$, hence the neutral hydrogen column density for this transition, while changing temperature. A cooler line blurred by an instrument resembles a warmer intrinsic line. The lower model has two equal Doppler cores separated by $24\mathrm{km}{\mathrm{s}}^{-1}$: reducing spectral resolving power merges them into one apparent feature. Both panels use invented profiles, Gaussian instrumental responses, and no noise or damping wings. They illustrate an inverse problem, rather than measurements of temperature or a universal relation between a dip and a cloud.

Better observations provide the inputs to that inverse problem. Kim, Cristiani and D'Odorico (2001) analyzed three quasars with the VLT's UVES spectrograph. For HE2217–2818, Table 1 records $z_Q=2.413$ and $16200\mathrm{s}$ of exposure in the $3050$–$3860\text{A˚}$ setup in October 1999. Isolated thorium-argon lamp lines measured $R\simeq 45000$; the data were resampled into $0.05\text{A˚}$ bins, with signal-to-noise ratios about $45$–$50$ per pixel over $3550$–$4050\text{A˚}$. They fitted a local polynomial continuum, fitted Voigt profiles, and compared statistics of the transmitted flux. Their analysis excluded the region near the quasar to avoid the quasar proximity effect and used the interval between its Lyman-beta and Lyman-alpha emission to reduce confusion with other Lyman-series absorption. Features below $N_{\mathrm{HI}}=10^{12.5}\mathrm{c}{\mathrm{m}}^{-2}$ became confused with noise, setting their adopted lower column density limit. Figure 1 shows the measured spectrum, fitted profiles and residuals. This was a calibrated absorption measurement, with explicit selection limits. ^[ref].

Even after instrumental correction, a width need not be purely thermal Doppler broadening. Hubble flow across extended gas, peculiar velocity structure and unresolved blends can contribute. If an isolated line's intrinsic width obeys $b^2=b_{\mathrm{th}}^2+b_{\mathrm{nt}}^2$ with an independent Gaussian nonthermal contribution $b_{\mathrm{nt}}^2\ge 0$, then $T\le m_{\mathrm{H}}{b}^2/(2k_B)$; $b=25\mathrm{km}{\mathrm{s}}^{-1}$ gives a computed upper bound about $3.79\times 10^4\mathrm{K}$. A complex blend need not satisfy this single-component model. Noise can also bias the fitted widths of weak lines. This is why the thermal cutoff of Lyman-alpha line widths, calibrated against gas models, is more informative than assigning a temperature to every dip. ^[ref].

Finally, neutral hydrogen column density is not total gas mass density. In a pure hydrogen approximation, with gas optically thin to ionizing radiation and nearly fully ionized in photoionization equilibrium, the Lyman-alpha forest photoionization scaling giveswhere $n_{\mathrm{H}}$ counts all hydrogen nuclei, $\Gamma$ is the photoionization rate, $\alpha (T)$ is the radiative recombination coefficient and $x_{\mathrm{HI}}=n_{\mathrm{HI}}/n_{\mathrm{H}}$ is the neutral fraction. At fixed temperature and $\Gamma$, doubling $n_{\mathrm{H}}$ quadruples $n_{\mathrm{HI}}$; doubling $\Gamma$ halves it. These computed examples explain both the sensitivity to density contrast and the ambiguity: stronger absorption can mean denser gas, weaker ionizing radiation, a different temperature, or more path length. The Jeans-length ionization correction for the Lyman-alpha forest adds a size model rather than an independently measured depth. Optically thick Lyman limit systems and damped Lyman-alpha systems require different treatment. ^[ref]. ^[ref].

The beauty of the Lyman-alpha forest is that a spectrum converts otherwise faint foreground gas into a sequence of markers through cosmic time. With a model of radiative transfer, velocities, ionizing radiation and the temperature-density relation of photoionized intergalactic gas, its transmission statistics probe the cosmic web and gas thermal history. A single line of sight remains one narrow sample, not a unique three-dimensional density map. ^[ref].

The Lyman-alpha line is the hydrogen $2p\leftrightarrow 1s$ electric-dipole transition, with photon energy about $10.2\mathrm{eV}$ and vacuum wavelength about $1216$ angstroms. Its emission cools collisionally excited gas, while absorption traces neutral hydrogen along a background-source sightline.

For the unresolved Lyman-alpha line, the lower $1s$ and combined upper $2p$ state degeneracies are $g_1=2$ and $g_2=6$, so the Einstein coefficients giveThe measured equivalent width $W=7.0\times 10^{-12}\mathrm{m}$ then impliesAssume a central transverse line of sight through a uniform filament, so $\ell =d=0.5\mathrm{Mpc}=1.54\times 10^{22}\mathrm{m}$. Nearly all neutral hydrogen is in its ground state at this temperature, henceThe cylinder's length $L$ determines its total volume but does not enter a transverse column density. Geometry must be specified: an axial line of sight has $\ell =L$ and gives $n_{\mathrm{HI}}=4.2\times 10^{-7}{\mathrm{m}}^{-3}$ for the same measured equivalent width. Intermediate chords give intermediate path-dependent estimates. The numbers above treat $W$ as a rest-frame equivalent width; an observed value at redshift $z$ must first be divided by $1+z$.

The Lyman-alpha forest is the large collection of narrow Lyman-alpha absorption features in the spectrum of a distant quasar. Neutral hydrogen in foreground gas absorbs at its own redshifted $1s\to 2p$ resonance, so an absorber at $z_{\mathrm{abs}}$ places its feature atOrdinary intervening absorbers have $z_{\mathrm{abs}}<z_Q$, putting their Lyman-alpha lines blueward of the quasar's own broad Lyman-alpha emission. Many different absorbing patches along the same line of sight make the forest; they are not different transitions of one cloud. At sufficiently short wavelengths higher Lyman-series transitions can overlap the forest, so an actual analysis identifies these blends rather than treating every dip as isolated Ly-alpha.

The upper panel is an original schematic spectrum for $z_Q=3$, with absorption features at smaller cosmological redshifts and a broad emission feature near $4863$ Å. The lower panel anticipates the column-density discussion: both curves are teaching sketches, not measured spectra or fitted survey distributions. The ordinary Lyman-alpha forest mainly traces the fluctuating, photoionized intergalactic medium, rather than a collection of identical isolated, neutral clouds.

Hydrogen is the most abundant element, and its Lyman-alpha line is a strong resonance from the ground state. Very small neutral fractions in an otherwise ionized intergalactic medium therefore produce detectable Lyman-alpha absorption. A long quasar sightline samples a great many modest density enhancements in the cosmic gas, with a much larger covering area than the compact high-column regions that produce damped Lyman-alpha systems.

Heavy-element absorption additionally requires metal enrichment and enough ions in the relevant ionization state. Many weak Lyman-alpha forest absorbers contain too few such ions to produce detectable metal lines at the same sensitivity, while high-column Lyman limit systems and damped Lyman-alpha systems are intrinsically rarer. Thus abundant hydrogen, a sensitive resonance and the large interception area of diffuse gas together explain the forest's numerical dominance. The comparison is between absorber classes at specified observational sensitivity; it does not mean that a metal-rich system has only one spectral transition.

The Lyman-alpha forest is the collection of absorption lines blueward of a distant quasar's own Lyman-alpha line. Foreground neutral hydrogen removes photons at rest wavelength ${\lambda }_{\alpha }\simeq 1215.67$ angstroms, observed at $\lambda =(1+z){\lambda }_{\alpha }$ because of cosmological redshift. Gas at many different foreground redshifts therefore produces many lines. The weak forest traces diffuse, mostly ionized intergalactic medium, rather than a population of fully neutral clouds; much stronger, self-shielded absorbers are a separate regime. Madau's account of quasar absorption systems distinguishes these column-density regimes.

For an illustrative $n=2\to 1s$ emission calculation, retain only the first-order shifts above and neglect the quadratic shift of the hydrogen atom ground state. The unperturbed Lyman-alpha line frequency is ${\nu }_0=(E_2-E_1)/h$. The possible offsets areThe outer pair originates in the $p_0$ parts of $|{\psi }_{\pm }⟩$ and has transition electric dipole moments along the applied electric field, conventionally called $\pi$ components. The central pair originates in $p_{\pm 1}$ and has transverse rotating transition electric dipole moments, conventionally called ${\sigma }^{\pm }$ components. Because electromagnetic radiation is transverse, the $\pi$ components disappear when viewed along the electric field. Viewed from the side, the $\pi$ and $\sigma$ components have polarization of an electromagnetic wave respectively parallel and perpendicular to the applied electric field. Line intensities additionally require the initial quantum state populations and the collection geometry.