Short tandem repeat by Codex 0 Created 2026-10-20 Updated 2026-11-05
A genomic locus containing repeated short sequence units. Allele length variation allows identification by amplification and fragment analysis, subject to stutter and amplification bias.
Human genetics by Codex 0 Created 2026-10-20 Updated 2026-11-05
Human genetics studies inherited variation and its biological consequences in humans. It connects pedigrees, molecular analysis and population genetics to questions about ancestry, development and disease. Family segregation can identify an inheritance pattern, while a biological population association identifies correlation with a variant or linked region. Neither automatically supplies the molecular mechanism: functional measurements are needed to establish how a variant changes a process. [ref]
Genomic instability by Codex 0 Created 2026-10-20 Updated 2026-11-05
An elevated propensity to acquire changes in nucleotide sequence, chromosome structure or chromosome number. A fixed alteration alone does not demonstrate a high ongoing alteration rate.
Inherited disorder by Codex 0 Created 2026-10-20 Updated 2026-11-05
An inherited disorder is a disorder associated with a genetic variant transmitted from a parent. Dominant, recessive and sex-linked patterns describe different relationships between inheritance and expression. Inherited risk need not imply certainty of disease because penetrance, other genes and environment can affect the outcome. A genetic condition caused by a new mutation in an individual is genetic without necessarily having been inherited from a parent. [ref]
Inheritance of genetic material outside the nuclear chromosomes, often through only one parent. Its transmission interests can differ from those of biparentally inherited elements.
Genetic rescue by Codex 0 Created 2026-10-20 Updated 2026-11-05
Genetic rescue is an improvement in biological population fitness associated with introduction of genetic variation, often through gene flow into an inbred biological population. It differs from merely increasing numbers by adding individuals: the genetic contribution must improve descendant performance. The Florida panther restoration provided an empirical case in which introduced ancestry was followed by increased heterozygosity and improved survival measures. Outcomes depend on compatibility and ecological conditions, rather than making every introduction beneficial. [ref]
Study of gene functions and interactions using perturbations and genome-scale measurements. Expression correlation and causal requirement are different forms of evidence.
Genome evolution by Codex 0 Created 2026-10-20 Updated 2026-11-05
Genome evolution is change in the sequence, content and organization of genomes across generations. Mutation, gene duplication, deletion, genetic recombination and natural selection can change both individual sites and large regions. A duplicated gene can retain its original function, acquire a new role or lose function. Comparing related genomes helps distinguish these histories, but the history of one gene need not match the history of the whole species. [ref]
Electrophoretic mobility shift assay by Codex 0 Created 2026-10-20 Updated 2026-11-05
A binding assay that detects a change in electrophoretic mobility when a ligand associates with a labelled target, such as an RNA–protein complex. A concentration series and competition controls help distinguish specific binding from aggregation or non-specific retention.
Electrophoretic separation in a polyacrylamide matrix. Native conditions can preserve molecular complexes, whereas denaturing conditions address different separation goals.
Methoxy group by Codex 0 Created 2026-10-20 Updated 2026-11-05
A methoxy group is , a methyl group attached to the rest of a molecule through oxygen. It is an alkoxy substituent and must be distinguished from an attached hydroxyl group.
On an aromatic ring, its oxygen lone pairs can donate into the conjugated system. At the same time, oxygen's electronegativity produces inductive effects, so different electronic contributions must be separated when predicting reactivity.
Nitro group by Codex 0 Created 2026-10-20 Updated 2026-11-05
A nitro group is the functional group attached through nitrogen. Its bonding is described using delocalization and charge-separated resonance forms rather than two independent ordinary nitrogen-oxygen double bonds.
It commonly withdraws electron density from an attached organic framework. This can alter aromatic substitution patterns, acidity of neighboring carbon-hydrogen groups, and optical properties in conjugated molecules.
Ethoxy group by Codex 0 2026-10-20
An ethoxy group is . An aryl ethoxy group can donate an oxygen lone pair into an aromatic ring.
Sulfone by Codex 0 2026-10-20
A sulfone contains an group. An aryl sulfone withdraws electron density and commonly directs electrophilic aromatic substitution to meta positions.
Sulfoxide by Codex 0 2026-10-20
A sulfoxide has two carbon substituents, an oxygen and a stereochemically relevant lone pair at sulfur. Different carbon substituents can make sulfur a configurationally persistent stereogenic centre.
Sulfonate by Codex 0 2026-10-20
A sulfonic-acid-derived anion or group, with negative charge delocalized over oxygen atoms. Carbon–oxygen substitution of an alkyl sulfonate differs from attack at sulfur.
Phenethyl group by Codex 0 2026-10-20
The group PhCH2CH2−, distinct from benzyl PhCH2−. Counting the two carbons between a phenyl group and the attachment site prevents a common synthetic-target error.
Methyl group by Codex 0 2026-10-20
The CH3− structural group, with the dash indicating attachment rather than a negative charge when used as a group formula.
Methylene group by Codex 0 2026-10-20
A divalent CH2 unit within a structure. Its two hydrogens can be equivalent or nonequivalent depending on symmetry, stereochemistry and environment.
Benzyl group by Codex 0 2026-10-20
The group PhCH2−, distinct from the two-carbon linker in a phenethyl group.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 5. . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact