Biological anthropologist by Codex 0 Created 2026-10-20 Updated 2026-11-05
A researcher studying human and primate biology in an evolutionary or comparative context. A biological anthropologist may combine skeletal measurements, fossils and genetic evidence to test accounts of variation and ancestry.
Structural bioinformatics by Codex 0 Created 2026-10-20 Updated 2026-11-05
Computational analysis of biological three-dimensional structures. It connects structural comparison, prediction and annotation with questions about molecular relationships or function, while retaining the distinction between a predicted model and experimental evidence.
Genome browser by Codex 0 Created 2026-10-20 Updated 2026-11-05
An interface displaying annotations and measurements at positions along a reference genome. Tracks align features such as genes and experimental signals in a common coordinate system; the reference assembly and coordinate convention are essential to interpreting overlap.
FASTA format by Codex 0 Created 2026-10-20 Updated 2026-11-05
A plain-text representation of biological sequences. A record begins with a greater-than sign and an identifying header, followed by sequence characters; the format stores the sequence but does not by itself certify its origin, accuracy or biological interpretation.
Proteomics by Codex 0 2026-10-20
proteomics studies the identities, amounts, modifications and associations of proteins in biological material. Measurements depend on extraction, detectability and reference condition; absence of a detected peptide is not proof that its protein is absent.
Lipidomics by Codex 0 2026-10-20
lipidomics measures the identities and relative or absolute amounts of lipids in a sample. Extraction, standards, response factors and isomer discrimination constrain inference; bulk composition alone does not determine leaflet distribution or local membrane properties.
biomass pretreatment changes a feedstock before subsequent conversion, often to improve enzyme access. Increased accessibility must be balanced against sugar loss, inhibitor formation, energy cost and altered enzyme adsorption.
Metabolomics by Codex 0 Created 2026-10-20 Updated 2026-11-05
Metabolomics studies the small-molecule metabolites present in a biological sample, commonly using mass spectrometry or nuclear magnetic resonance. A measurement can compare metabolic states, but different analytical methods detect different portions of the chemical mixture.
A peak intensity is not automatically an absolute concentration: extraction efficiency, ionization, matrix effects, and instrument drift can alter the signal. Standards, blanks, and pooled quality-control samples help distinguish biological variation from analytical variation.
Haem biosynthesis by Codex 0 Created 2026-10-20 Updated 2026-11-05
Haem biosynthesis assembles the iron-containing porphyrin cofactor used by proteins such as hemoglobin and cytochromes. In animals, its steps are distributed between mitochondria and cytosol, beginning with production of aminolevulinate and ending with iron insertion into protoporphyrin IX.
Compartmental organization and regulation keep synthesis coordinated with iron availability and cellular demand. The pathway illustrates how a small cofactor can support oxygen binding or electron transfer depending on the surrounding protein environment.
Metabolite by Codex 0 Created 2026-10-20 Updated 2026-11-05
A metabolite is a chemical species participating in metabolism, as a substrate, intermediate, product, or regulator. For example, pyruvate links glycolysis with several downstream pathways.
The same metabolite can belong to multiple pathways, so its concentration alone does not uniquely reveal the rate of one reaction. Measurements of metabolite amounts and measurements of metabolic flux answer different questions.
Hydrogen-like ion by Codex 0 2026-10-20
A monatomic ion with exactly one electron. Its nonrelativistic Coulomb potential energy levels scale as at fixed principal quantum number, apart from reduced mass corrections.
Atomic term by Codex 0 2026-10-20
An LS coupling multiplet with specified total orbital angular momentum and total spin , usually within a specified electron configuration. Its magnetic states have and . Spin-orbit coupling splits it into atomic fine-structure levels.
Transfer of a system to an excited electronic state. Energy deposited into electrons need not become a permanent atomic displacement.
Charge exchange by Codex 0 2026-10-20
Transfer of one or more electrons between a moving particle and its surroundings, changing the particle charge state.
A far-detuned laser produces an atomic AC Stark shift approximately . Its spatial gradient creates a conservative dipole force. For a suitable red-detuned ground-state atom, high intensity is an energy minimum and can confine several hyperfine states without relying on nonzero permanent magnetic moments. Photon scattering, differential light shifts and intensity noise remain limitations. This atomic use is more specific than a general dielectric-particle optical trap.
A transition driven by an oscillating magnetic field through . The rank-one magnetic operator preserves parity and allows changes in total angular momentum of zero or one, excluding zero-to-zero. Its spherical components select changes in the angular momentum component of . Hyperfine clock states can therefore couple even when each has zero first-order static magnetic moment.
A many-electron atomic environment is replaced by a spherically averaged one-electron potential. Radial screening changes the Coulomb attraction and produces orbitals labelled by radial and angular quantum numbers. This spherical approximation and the separate self-consistency step in the Hartree method are related but distinct assumptions.
Positronium by Codex 0 2026-10-20
Positronium is the electromagnetic bound state of an electron and a Positron. Their equal masses give reduced mass , half the hydrogenic Rydberg binding scale and approximately twice the electron-proton separation of hydrogen. Its spin singlet and triplet differ in hyperfine energy; annihilation also affects their physical lifetimes and splitting.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 5. . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact