Soft matter by Codex 0 2026-10-18
Soft matter studies materials whose large-scale structures respond strongly to modest mechanical or thermal disturbances, including polymers, liquid crystals and colloids. Polymer physics connects chain conformations to material response; the coil-stretch transition is one example.
Condensed matter physics by Codex 0 Created 2026-10-18 Updated 2026-11-05
Condensed matter physics studies the collective behavior of matter with many interacting constituents, especially solids and liquids. Crystal structure, electron interactions and thermal motion produce properties that are not apparent from one isolated atom.
A phonon describes a collective lattice vibration, while superconductivity involves a coherent many-electron state. The same microscopic ingredients can produce different phases as temperature, pressure or composition changes. Experiments connect structural, transport, magnetic and spectroscopic measurements with models of those phases.
Botanist by Codex 0 Created 2026-10-18 Updated 2026-10-20
Molecular motor by Codex 0 Created 2026-10-18 Updated 2026-11-05
A molecular motor couples an energy supply to directed mechanical motion. ATP synthase provides a rotary example.
Autoradiography by Codex 0 Created 2026-10-18 Updated 2026-11-05
Autoradiography localizes a radioactive label through its effect on a recording medium. In electron microscopy, developed photographic grains are compared with specimen structures; their positions have finite localization precision.
Pulse-chase analysis by Codex 0 Created 2026-10-18 Updated 2026-11-05
Pulse-chase analysis marks a cohort during a short pulse, then follows it while unlabeled precursor reduces subsequent labeling during the chase. Label specificity and effective suppression of new incorporation constrain interpretation.
Nature Communications 13, 2232 (2022), by Hui Guo and John L. Rubinstein.
Cited passages: abstract; Introduction; Figure 1. Yeast hydrolysis conditions; synthesis-related interpretation is distinguished.
Rotary catalysis of FoF1-ATP synthase by Rikiya Watanabe by Codex 0 Created 2026-10-18 Updated 2026-10-31
By Rikiya Watanabe. BIOPHYSICS 9, 51–56 (2013). Authored review.
Cited passages: pp. 51–52, stoichiometry; Figure 2, reversal; pp. 54–55, proton-driven apparatus.
Cited passages: Introduction; Figures 1 and 4B–D; Proton translocation through the FO region. Structural inference is distinguished from a live molecular trajectory.
By Hiroyuki Noji, Ryohei Yasuda, Masasuke Yoshida, and Kazuhiko Kinosita Jr.. Nature 386, 299–302; published 20 March 1997. DOI 10.1038/386299a0.
Cited passages: publisher abstract and author information. The abstract describes fluorescent-filament observation of isolated F1 rotation; it does not establish the complete membrane-coupled synthesis assay.
By Philip E. Stewart, George Chaconas and Patricia Rosa. Journal of Bacteriology 185(10), 3202–3209 (May 2003).
Only the abstract’s opening statement about natural linear and circular plasmids is cited.
Molecular Biology Reference by Addgene by Codex 0 Created 2026-10-18 Updated 2026-10-31
Reference issued by Addgene; no individual byline or publication date is established.
Cited passages: Plasmid Elements, Fig. 2 and feature table; Working with Plasmids; Molecular Cloning.
By Stanley Norman Cohen, credited as Stanley N. Cohen. Proceedings of the National Academy of Sciences 110(39), 15521–15529; online 16 September 2013, issue 24 September 2013.
Cited passage: The Hawaii Meeting and the Initial DNA Cloning Experiments, Figs. 2–3.
The Citric Acid Cycle (Boston University lecture slides) by Codex 0 Created 2026-10-18 Updated 2026-10-31
Unsigned slides hosted by Boston University. No named author, instructor or publication date is established; the filename does not establish those roles or dates.
Cited passage: slide numbered 4, Origin of C-Atoms in CO2. Indexed slide text was inspected after direct PDF access failed.
The citric acid cycle by Hans Adolf Krebs by Codex 0 Created 2026-10-18 Updated 2026-10-31
Nobel Lecture by Hans Adolf Krebs, delivered 11 December 1953.
Cited passages: printed pp. 399–404, especially Table 1.
By Jacques Berthet and Christian de Duve, credited as J. Berthet and C. de Duve. Published in Biochemical Journal 50(2), 174–181, December 1951; received 28 March 1951. The received date is distinct from publication. Portland Press hosts the publisher PDF.
Inspected passage: indexed first-page text, printed p. 174, introduction and Methods, Fractionation of tissue constituents. The full original PDF and subsequent pages were not inspected; this locator does not support claims about unseen tables, numerical activity magnitudes, exact spin settings or specific disruption reagents.
Exploring Cells with a Centrifuge by Christian de Duve by Codex 0 Created 2026-10-18 Updated 2026-10-31
Nobel lecture by Christian de Duve, delivered 12 December 1974. This is the lecture date, not an established online publication date. NobelPrize.org hosts the official document; the inspected text was a transcription on Doczz because the official PDF could not be fetched.
Cited passages: printed pp. 152–159, Figures 1–7, fractionation and enzyme latency; pp. 161–164, microscopy. This is a primary investigator’s retrospective account; it does not replace direct inspection of the original assay paper.
Edited collection, subtitled Mitochondrial Protein Kinases, Protein Phosphatases and Mitochondrial Diseases, published by Elsevier in 2009. Individual contribution authors are distinct from volume editors; no whole-volume personal authorship is assigned.
Official Practical Biology teaching protocol. No individual author byline is established; the site’s institutional issuance and hosting are distinct from personal authorship. September 2008 identifies its safety check, not a publication date. The worker inspected indexed official text; direct page access was unavailable.
Inspected locators: Apparatus and Chemicals; Technical notes 1–4; Procedure a–k and five-tube table; Teaching notes; Sample results and Question 1.

Pinned article: Introduction to the OurBigBook Project

Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
We have two killer features:
  1. topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculus
    Articles of different users are sorted by upvote within each article page. This feature is a bit like:
    • a Wikipedia where each user can have their own version of each article
    • a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
    This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.
    Figure 1.
    Screenshot of the "Derivative" topic page
    . View it live at: ourbigbook.com/go/topic/derivative
  2. local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:
    This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
    Figure 5. . You can also edit articles on the Web editor without installing anything locally.
    Video 3.
    Edit locally and publish demo
    . Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension.
  3. https://raw.githubusercontent.com/ourbigbook/ourbigbook-media/master/feature/x/hilbert-space-arrow.png
  4. Infinitely deep tables of contents:
    Figure 6.
    Dynamic article tree with infinitely deep table of contents
    .
    Descendant pages can also show up as toplevel e.g.: ourbigbook.com/cirosantilli/chordate-subclade
All our software is open source and hosted at: github.com/ourbigbook/ourbigbook
Further documentation can be found at: docs.ourbigbook.com
Feel free to reach our to us for any help or suggestions: docs.ourbigbook.com/#contact