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A fixed pivot constrains a point of a rigid body to remain stationary in a specified frame while permitting rotation. With an ideal pivot at , the reaction force acts at and contributes no torque about that point. Angular momentum balance is therefore conveniently written about .
A rigid-body twist represents an instantaneous rigid body velocity field by a pair of three-dimensional vectors, conventionally ordered . In a stated reference frame, is angular velocity and is the velocity field evaluated at that frame's origin. Every point at position has instantaneous velocityThe linear component therefore need not be the center of mass velocity. Both components must use the same coordinate frame; their physical units also differ.[ref]
The formula follows by differentiating the point position , where is a rotation matrix and is fixed in the body. The skew-symmetric matrix acts as the cross product with . HenceAt the body's chosen origin , this correctly returns . Moving the reference origin by a fixed vector , without changing its axes, gives , with the same angular velocity. The numbers change while the physical velocity field is unchanged.
When , define the screw pitch and a point on the instantaneous axis byThe vector triple-product identity gives . Points on share that axial velocity; off-axis points additionally rotate about it. A constant rigid-body twist therefore generates a screw motion. Zero angular velocity instead gives pure rigid-body translation, for which these divisions are not defined.
For an original numerical example take and . At the velocity is . The axis passes through , with axial speed and screw pitch . If the twist stays constant for a revolution, the axial advance is .
Right ventricular ejection fraction is the fraction of the right ventricle's end-diastolic volume that leaves its cavity during systole. If is the filled volume and the residual end-systolic volume,where is stroke volume. It is a dimensionless ratio, usually reported as a percentage. The filling and ejection phases must refer to the same cardiac cycle; the tricuspid valve and pulmonary valve determine the normal direction of blood flow.[ref]
For example, mL and mL give mL and . A second right ventricle with volumes 200 and 100 mL also has right ventricular ejection fraction, but its stroke volume is 100 mL. A fraction describes emptying relative to the initial volume; it does not specify an absolute cardiac output.
A practical volumetric approach uses magnetic resonance imaging at multiple phases and image segmentation to estimate the two cavity volumes.[ref]
Reference right ventricular systolic and diastolic function normalized to age, gender and body surface area from steady-state free precession cardiovascular magnetic resonance by Alicia M. Maceira and others. Abstract: Aims; Methods and results
Consistent boundary choices matter because two measurements enter one ratio. For small volume errors, direct differentiation givesShared boundary errors need not act like independent errors. Moreover, cavity volume loss includes any backward flow through an incompetent tricuspid valve; the formula alone does not prove that all of the calculated stroke volume reached the pulmonary trunk.Ribosomal protein L22 is a bacterial ribosomal protein with a tunnel-facing contribution to the environment encountered by an emerging polypeptide chain. Its molecular identity and its role in a particular regulatory stall are separate levels of description: showing that a residue affects one nascent-chain response does not establish that every translation event is affected equally.
A 2002 genetic experiment provided a concrete functional connection. Mutations bypassing SecM-dependent elongation arrest were found in ribosomal protein L22 and 23S ribosomal RNA. The altered residues faced the narrow constriction of the ribosomal exit tunnel. Their positions and effects supported an interaction between that region and the nascent chain.[ref]
The ribosomal exit tunnel functions as a discriminating gate by Hitoshi Nakatogawa and Koreaki Ito. Primary Abstract: suppressor mutations, tunnel-facing positions and interpretation
An original comparison illustrates how to distinguish a sequence-sensitive effect from a general failure of translation. Suppose an assay measures the arrested fraction for an arrest-capable peptide and for a control peptide:These invented values show a change associated mainly with the arrest-capable sequence. Measuring only its0.8-to-0.2 change would omit the comparison supplied by the control. Such a pattern would motivate a sequence-sensitive explanation, but additional checks of assembly, abundance and general translation competence would still be needed.
The experiment also separates an affected protein component from the larger molecular apparatus. L22 acts within a ribosome containing ribosomal RNA and many other components. A mutation's effect can depend on that surrounding structure and on the peptide being synthesized. Functional perturbation and structural location therefore complement one another without making the isolated protein the entire arrest mechanism.
Ribosomal protein S1 is an RNA-binding ribosomal protein that helps many bacterial messenger RNAs engage the small ribosomal subunit for translation initiation. In Escherichia coli, S1 is a single polypeptide chain containing six related S1 RNA-binding domains. The whole protein and its repeated domain are distinct concepts; an S1 domain also occurs in proteins outside the ribosome.[ref]
Escherichia coli Ribosomal Protein S1 Unfolds Structured mRNAs Onto the Ribosome for Active Translation Initiation by Mélodie Duval and others. Introduction, E. coli S1 architecture
[ref]A 2013 study tested how S1 helps structured messages enter the decoding region. Researchers compared intact, S1-depleted and reconstituted 30S subunits, including S1 variants missing selected domains. Binding measurements and toeprinting distinguished RNA association from formation of a correctly positioned 30S initiation complex. The experiments showed different domain requirements for different messages; the first three domains were important for handling the tested structured rpsO message.[ref]
Escherichia coli Ribosomal Protein S1 Unfolds Structured mRNAs Onto the Ribosome for Active Translation Initiation by Mélodie Duval and others. Figures 3–4 and Figure S5, domain deletions and initiation-complex comparisons
For an illustrative control, suppose removing S1 reduces an initiation-associated signal for a folded message but changes a simpler message little. Restoring the signal by adding back intact S1 would support a message-dependent contribution. General loss of ribosome assembly or unequal RNA amounts could also change the readout, so they require separate checks. An RNA-binding measurement alone does not establish completed translation; a domain count alone does not specify how many functional binding sites a protein supplies.
Antisense RNA is RNA complementary to a specified sense transcript or part of it, allowing antiparallel base pairing with that target. Sense and antisense are relational labels: the target and strand orientation must be specified. Antisense molecules can occur naturally or be produced experimentally, and complementary pairing can influence transcript processing, stability or access to translation machinery.[ref]
Molecular Biology of the Cell, 4th edition by Bruce Alberts and others. Chapter7, Control of Gene Expression: antisense RNA and post-transcriptional regulation
For an original sequence example, a target segment pairs with . Written in the usual -to- direction, the antisense sequence is . Merely replacing each target letter by its complement without reversing the written direction gives a different sequence.
A tomato experiment expressed Antisense RNA directed against 1-aminocyclopropane-1-carboxylate synthase, a precursor-forming enzyme in ethylene biosynthesis. Ripening was inhibited, and supplying ethylene or propylene reversed the effect. The intervention and rescue linked altered expression to a physiological signal pathway, rather than treating ripening and ethylene production as a simple correlation.[ref]
Reversible inhibition of tomato fruit senescence by antisense RNA by P. W. Oeller and others. 1991 abstract: antisense intervention and reversal by external gas
Complementarity alone is not a quantitative prediction of suppression. Target accessibility, expression levels and the cellular machinery determine the outcome. An Antisense RNA construct, an observed change in target protein and an observed phenotype therefore provide different pieces of evidence.
Negative-sense RNA is RNA whose sequence is complementary to the corresponding messenger RNA sequence. “Negative” specifies orientation relative to a coding message; it does not mean negative electric charge, damage, or lack of biological function. A negative-sense viral genome must first be copied into a message-compatible Positive-sense RNA before its encoded proteins can be made by translation.
For a short illustrative message , the complementary template is , equivalently when written in the conventional direction. The strands are complementary and antiparallel. Simply reversing the letters, without exchanging complementary bases, would not produce the negative-sense template. This small example shows why both sequence and direction matter.
The requirement creates a startup problem for a virus: if the entering genome cannot itself serve as messenger RNA, how can it make the enzyme needed to copy that genome? Vesicular stomatitis virus solves this by carrying an RNA-dependent RNA polymerase in its viral particle. In the 1970 experiment by D. Baltimore, A. S. Huang and M. Stampfer, virion preparations incorporated supplied ribonucleotide substrates into new RNA; the main product was complementary in sequence to the viral genome.[ref]
Ribonucleic acid synthesis of vesicular stomatitis virus, II. An RNA polymerase in the virion by D. Baltimore and others. Abstract and virion-associated RNA-synthesis assay: complementary RNA product.
This experiment connects a sequence classification to physical machinery packaged with the genome. Positive-sense RNA and Negative-sense RNA describe the relation of an RNA region to the coding message; identifying the sense does not by itself specify all details of genome segmentation, replication intermediates or transcription control.
Positive-sense RNA has the sequence orientation of a corresponding messenger RNA, rather than being its complementary template. In a positive-sense RNA virus, the entering genome can provide a coding message for translation, allowing production of the viral machinery that subsequently copies RNA. This is a sequence-and-function distinction, not a claim about the molecule's electric charge.
For example, a positive-sense coding segment begins with the codons AUG and GCU in that reading frame. Its complementary negative-sense template is . A polymerase copying that template produces the positive-sense sequence. Both directions and complementary bases are needed; reversing a string alone is insufficient.
Early experiments with poliovirus made the informational role of viral RNA concrete. Isolated RNA introduced under suitable conditions infected human cell monolayers and yielded virus of the original type. Ribonuclease abolished the isolated RNA's infectivity, whereas intact-virus infectivity resisted the same enzyme treatment, supporting the interpretation that exposed RNA carried the infectious genetic information.[ref]
Infectivity of ribonucleic acid from poliovirus in human cell monolayers by H. E. Alexander and others. Abstract: HeLa and human amnion monolayers, type-specific virus production and RNAase controls.
This does not mean naked RNA naturally enters every cell efficiently; the experiment depended on preparation and exposure conditions. It also does not eliminate the need for an RNA-dependent RNA polymerase during genome replication. The distinction from Negative-sense RNA concerns how the initial coding message is obtained, rather than whether replication ever requires a complementary strand.
An RNA cyclic phosphate end is an RNA terminus in which a phosphate group links the and oxygens of the terminal ribose, forming a small cyclic phosphodiester bond arrangement. The ring is local to the terminal nucleotide; the whole RNA chain need not be circular. This end chemistry differs from both a free hydroxyl group and an ordinary terminal phosphate.[ref]
GTP-dependent RtcB RNA splicing by Anupam K. Chakravarty and Stewart Shuman. Figure1, cyclic-phosphate and linear-phosphate end structures
The difference matters for RNA ligation. A 2012 study showed that RtcB opens the cyclic end to a phosphate before joining it to an RNA hydroxyl group. The reactions depended on GTP and enzyme guanylylation. Researchers followed labelled products over time using denaturing polyacrylamide gel electrophoresis, distinguishing starting cyclic ends, transient products and joined RNA.[ref]
GTP-dependent RtcB RNA splicing by Anupam K. Chakravarty and Stewart Shuman. Abstract and Figures2–3, sequential end processing and labelled-product analysis
As a measurement example, two four-nucleotide RNA molecules could both spell
AUGC while one ends in a free hydroxyl group and the other in a cyclic phosphate. A readout reporting only their letters would merge them, even though a reaction requiring the free hydroxyl group could distinguish them. Nucleotide sequence therefore does not completely specify terminal chemistry, and terminal chemistry can determine which RNA molecules an assay records. Pinned article: Introduction to the OurBigBook Project
Welcome to the OurBigBook Project! Our goal is to create the perfect publishing platform for STEM subjects, and get university-level students to write the best free STEM tutorials ever.
Everyone is welcome to create an account and play with the site: ourbigbook.com/go/register. We belive that students themselves can write amazing tutorials, but teachers are welcome too. You can write about anything you want, it doesn't have to be STEM or even educational. Silly test content is very welcome and you won't be penalized in any way. Just keep it legal!
Intro to OurBigBook
. Source. We have two killer features:
- topics: topics group articles by different users with the same title, e.g. here is the topic for the "Fundamental Theorem of Calculus" ourbigbook.com/go/topic/fundamental-theorem-of-calculusArticles of different users are sorted by upvote within each article page. This feature is a bit like:
- a Wikipedia where each user can have their own version of each article
- a Q&A website like Stack Overflow, where multiple people can give their views on a given topic, and the best ones are sorted by upvote. Except you don't need to wait for someone to ask first, and any topic goes, no matter how narrow or broad
This feature makes it possible for readers to find better explanations of any topic created by other writers. And it allows writers to create an explanation in a place that readers might actually find it.Figure 1. Screenshot of the "Derivative" topic page. View it live at: ourbigbook.com/go/topic/derivativeVideo 2. OurBigBook Web topics demo. Source. - local editing: you can store all your personal knowledge base content locally in a plaintext markup format that can be edited locally and published either:This way you can be sure that even if OurBigBook.com were to go down one day (which we have no plans to do as it is quite cheap to host!), your content will still be perfectly readable as a static site.
- to OurBigBook.com to get awesome multi-user features like topics and likes
- as HTML files to a static website, which you can host yourself for free on many external providers like GitHub Pages, and remain in full control
Figure 2. You can publish local OurBigBook lightweight markup files to either OurBigBook.com or as a static website.Figure 3. Visual Studio Code extension installation.Figure 5. . You can also edit articles on the Web editor without installing anything locally. Video 3. Edit locally and publish demo. Source. This shows editing OurBigBook Markup and publishing it using the Visual Studio Code extension. - Infinitely deep tables of contents:
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